CI01000066_02977587_02982602


Basic Information

Item Value
gene id CI01000066_02977587_02982602
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2975647 ~ 2982870 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000066_02977587_02982602.mRNA
ATATAAAAGGCCATCTAGATTTGTATCAGTGTGCAATTCATGAGGCTTGGCATTGTAATATCCTCACTGCTGAAAAAATGATCCACAGCGCCACGATATTAATAACACGGTCGGCCAATATTAGCAATTATGTCTTGATGGATGAGTGCGTTATTGTAGGAGGCGACTGGGACCGATGTGCCGGCAGAAGCCGAAATCAAAAAGACCCAAAGTGTCGAAGGCCCAGAGAACATTTCCCTCCCTTTATGTAAATCCTTCTAGACAAGCGGCATCTCCCTCAACGACTCAATTAACGGGCCCGATTTTAAACGATGTTTCTGTAAAGACGCCGCTGCTCGATGCCTTTGTTGTTGCTGAGGGAAGCGCTGTTCTCCCTCAGGCTCTGGGGAAATATCTGAACTCTGCGTGGGTTTCGTCTCTGTTTTTTTCCCCCTTTATCAGCGATAAAAGCACAAAGCAAGAATTCAGGTGAGGATTGCGATGCAAGCGCTAACGCTATGCAGTCGTGTACCGGCTCACCTTGCCTGGCTGTCGACCTCTCCTCCCTAACTCTACGTCCCACTGAGTCTTTCAGACACTGACAGTAGTGCGAATGGCTACATACCACCACTAATGCGCTAAAACCCTCTGACAGAGTGGAGAATATGGACGGGGTAAGCTGAGAAATGAAAGACAGTAAAGCGAGCTTTGAAATGCCCACGTTACGCTGAGTCTGGAGTCCCTCTGGATCATGGCAGGGAGGCTGGTGGATGTTTCAGGATATTTAAAGACAGTTAAAAGAAAAGCACCTGGGAGTTCAAATTCAATGAAAATTCTTTCTTTTTCATTTGCATGATGGGGCCAGTGTTGTTTTTAAACTCCAAATTAATTGCTGAATTTAAAGGGATGGATGGATGGATGGATGGATGGAAGGATGGATGGAAGGATGGATGGATGGAAGGATGGATGGATGGACAGAGACAGTTGGACGGATGGATGGATGGATGGGCTGATAGACAGACGGATGGATGGATGGATGGACGGACAGAGACAGTTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGACAGAGACAGTTGGACGGATGGATGGATGGGCTGATAGACAGACAGATGGATGGATGGATGGATGGATGGATGGATTGGCTGATAGACAGACAGATGGATGGACAGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGACAGACGGATGATGGATGGATAGATGGACAGACGGATGATGGATGGATAGATGGACAGACAGATGGATGGACGGACGGATGATGGACGGACGGATGATGGACAGTCAGATGGATGGATGGATGATGGATGGATGATGGATGGATGGATGGATGATGGATGGATAGATGGACAGACGGATGGATGGGCTGATAGACGTATGGATAGACAGAAGGACGAATGTATGGATGGATGGGTGGATGGGCTGACAGACGTATGGATAGACAGACGGACGGACGGATGGATGGATGGATGGGCTGACAAACGTATGGATAGACGGACGGACGGATGGATGGATGGGCTGACAGACGTATGGATAGACGGACGGACGGATGGATGGATGGGCTGACAGACGTATGGATAGACAGACAGACAGACAGTTGGATGGCAGGATGGATAGAATGATAGAACGATGGATAGATAGAAAGAAAGAAAGATAGAACAATAGATGTAGAGAACAACAGACGGATGGATGGATTCTTCATTTCTGAATTATGCTCAACCCTGAATAGAACAGAAATATAAAATAGTTTATGTGGCGCCAGCGTTTTAAATGACTGTGATTTATTGGATGAGTGCAGGACGGCCTGTAATCGTGTGAACTGCAGTGGAACAGAGTCTGGAGCTGTCAACGGTAAAAACTCCAGCACTTTTCACATGAATTCAGCTCACAGAAATGCTGCGAGGTCGACCGCTTCGCTTCATGCGTAAGACAACAGTCACTGAGCACAAAGTTTTCGCAAGAGCGAACGCGCCGATTGCTGCAGCTCGGACGAATCTTGCCCGACAGCAGAAAGAAAACATTGCTCAAATCACTCTGACTTTGGGTCGCAGGGAAAATATTGAGTTCCTTCGGCTCAGTCAACCACAATTCATTTTAACCCATAATTTAGGAGTCTCAGTTATGGATATACAGTACAGTGAGCACAGAGACACAGAGGGACATTTTATATCGACAGTGACCAAAAATCATTATCCTCTTTTCAAAAGCCCGGCTAGGCATAAACACACAGAGCTCAAAATACAGCATGCAAAATATGATGCCAGCAACATTAAACACCAATACATTTGTGAATTGGATTTTGATGACATACAGGTGAAGACACGCACATTTTCATATGCATACACACTTACCGCAGCACTGGCCCTGGGCTCAGTATGGAGCCTGCAAGCTAAAGCTGAACCCTCTGAAACTAGGTCACAGATTGATGATACAACCAGCACAGGCAACAGAACAGAACGCGAGCAAAATATTTTAGGAGAGCTCTCCAAACAACTGCAGAGCTGGAAACCCTCGGGCCTATGTAATCCAATCCATTAAACCGTGTGTGAGATGATGTGTTTGTTGAAGGATGTTGATTATTTTGTTATCGTTGTTTACCCTGTTAGTCCATATGGCGTGACGCAGCAGCGGTACACTCGTTTTTTACTGCTGATGCTTTAGTAAGCAGTGTTTATGAGAAGCTTATAAGAAATGGACTTTTGGCATAAAAGGGAAAACGAAAATTGGAACCCGAAACCAAAACTTGTAATTCAGATGAATTTTTTTTGGAAAAAAAAAAAAAAAAAAAAAAAAGTGTGTATATATA
>TU307983
TTACCGCAGGTGAGAGCTTCATGATAAATCCAGCAGAGATTGGTGCGACTTACACAACCGCTAGTGTGTGTGTGAGAGAGAGAGAGAAGGAGAGTGTGTATGTATGTCTAAACTGCCTTCACTGGCTGTCTTCCATGACAAACTGCCAATAGTTCTGTTCCCTGACGTCTCTCCACGAGCAATGACAGCAGAGAGAGAGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGATGCTGCTTTCACACAGCTGCTGCAGCGGCTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000066_02977587_02982602.mRNA False 2853 mRNA 0.45 4 2975647 2982870
TU307983 True 263 lncRNA 0.49 1 2981168 2981430

Neighbor

gene id symbol gene type direction distance location
CI01000066_02832702_02867162 NA coding upstream 108259 2831625 ~ 2867388 (+)
CI01000066_02808136_02808643 NA coding upstream 166967 2806997 ~ 2808680 (+)
CI01000066_02698232_02698587 NA coding upstream 276777 2698232 ~ 2698870 (+)
CI01000066_02644148_02648505 BCAP29 coding upstream 326542 2644086 ~ 2649105 (+)
CI01000066_02636488_02638384 NA coding upstream 337181 2636279 ~ 2638578 (+)
CI01000066_03011532_03035612 NA coding downstream 28545 3011415 ~ 3037266 (+)
CI01000066_03148145_03156040 NA coding downstream 165275 3148145 ~ 3156468 (+)
CI01000066_03174704_03185343 NAMPT, NAMPT.S, NAMPTA coding downstream 191834 3174704 ~ 3185343 (+)
CI01000066_03195286_03201328 SYPL1 coding downstream 212416 3195286 ~ 3201672 (+)
CI01000066_03211701_03215444 NA coding downstream 228831 3211701 ~ 3215446 (+)
G271378 NA non-coding upstream 5364 2970072 ~ 2970283 (+)
G271376 NA non-coding upstream 8997 2966360 ~ 2966650 (+)
G271370 NA non-coding upstream 17079 2958274 ~ 2958568 (+)
G271365 NA non-coding upstream 29819 2945351 ~ 2945828 (+)
G271356 NA non-coding upstream 46280 2928064 ~ 2929367 (+)
G271383 NA non-coding downstream 318 2983188 ~ 2985253 (+)
G271384 NA non-coding downstream 2466 2985336 ~ 2985830 (+)
G271385 NA non-coding downstream 6261 2989131 ~ 2989407 (+)
G271387 NA non-coding downstream 7501 2990371 ~ 2990825 (+)
G271388 NA non-coding downstream 9564 2992434 ~ 2992662 (+)
G271105 NA other upstream 536478 2430710 ~ 2439169 (+)
CI01000066_02296138_02305439 CMAH other upstream 668627 2296071 ~ 2305637 (+)
CI01000066_02274624_02277624 NA other upstream 696087 2274557 ~ 2278119 (+)
G270973 NA other upstream 1127895 1844452 ~ 1847752 (+)
CI01000066_03354136_03429399 GRM8A, GRM6, GRM8, GRM8B other downstream 363923 3353662 ~ 3429516 (+)

Expression


Co-expression Network