XLOC_001044


Basic Information

Item Value
gene id XLOC_001044
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10671852 ~ 10682149 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001676
GAGTATGAGTAATTGAGTAGCGTTACGAGTCGTGTTATAAACGTTTTCTGAGTTACTTGTGAGTTATGATCCTCGACGTCGAGACGTCTTTCATTTCTCATTGCTCGATTTCAGTCTATCTTACTTGCAGTATGAGAGCAGTCGAATGGATTTATTGCGAAATCTTATCCTTTAGAAATAGTGGCACGAGGAGACACGGCTGTTGTGTTTGGTCAGGATGCTTCTCTCTCATGTACTTTGCCGTTCGTGTCAGGCGTCAGACAGGTGACATGGCAGCGGGTGCGTGCGCAGGATGTACACACTCTGGCCACGTTCAGCGAGCGCTTCAAGGATAATGTGGATGAGGACTTTGTCAGAAAGATCATTTTCCAAGCATCGTTTAATTCAACAACTATTGagataaaaaacacaacatttgAAGATGAGGCTTGCTACATTTGTTCCTTTAAAGTGTATCCAACAGGACCCAAACGAGAAACCTTGTGCGTCACTGTTAAAGGTATCTCAGAAATAACAGCGGCAGTGAATCCTGCAGACACTTCTAATACAGAAGTTGTGATTTCATGTTCAGCGACTGGTAAACCAGCTCCAACAATCCAGTGGAAATCCACAGAACAAGAGCTGAAGCACTTCAGGTCAGATGAGTTCACAACCCACAACAAAGACGGCTCAACCACTGTTACAAGCAACATCACACTTCAGCTATCCCAGTTTCATGGCAAGTACGTGGAGTGTTTGGCTCAAAGTGACGACATAGAGAGGAGCGAAACAATTGTGGTATCGCAAACAGAACATAAAGAGAACAGTGTTACATTAAGAAATTACACAATTCCGGTGTTGATTGTTGTAATCATCAGTATCGTCATTATTGCCATCATTCTTCACACCATGTTAAAGGATTCAAAAAATGTGAAATCTGAATGCACAGCATGAACTACTGCTCAGCTTCCACTTTATTCAAACCATCAGGCTTTTCTGATGCTACATTCCTCATCTATTATAATAGTCACTTTGTTTACATGCATGCATAAGCTAGCAATTGTAGCGTAGTGCAGTGTTACTCAACCACATTTTTGGAGGAACACCAACACAGCATGATTTATGCCACGGTCACTAGAGTTTGAGGATATGAAATTCTGTTgtaaaggggcgggattaaacatgatgattagatttaaaaaagcaagcgattggtccatattttacattactgtacagAGGTCATGGCTGTGTACAAGATTGCCTACTACtcaataggtactgcatttgaaattaaatgtactactcggttgttagaaaagtacgttctataaagtatgaatggaatttggatgtactacatctgccatgtTGTCATTATCACGTGGCCTACCTACGTGAGTTCCAtcgcttcaggtgtgtttggttaaggagacatgagaaatgtgcagagctggtggtcctccaggatctggcctaatgtttattcattcatttttctttggcttagtctttatttcagaggttgccacagtggaatgaaccgccaactattccagcatgttttacacagtggatgcccttacagccgcaaaccagtattgggaaacacccacacactctcacatttacatactcacactatggtcaatttagtttatttaattcacatatagcgcatgtctttgaactttggGTGTAactggaggacccggaggaaacccacgccaacacagggaaaacatgcaaactccacatagaaatgccaactggcccagccgggactcgaacctgcaaccttttcACTGTGAGGCTAACCATGAAGCCACCGTGTTGGCAATGTTTGTATAAATTTACCCTGTGTATCCACAAATAATGTCTACTGCACTTTATGAATCTAGGATGActtctttttgttctttttgtattatttattttttacagtgtgaagactttgtatattttctttttttgtgcttTAGTGGTTTGTTTactgtgtgcattttttttacctttgGTTTGTGAGTTTACTGGATGTGAATTTTGTGTTGCCAAACATTAAAATTTGAAACTCATAAATGTTATACTAACTTGAAGTTTCGCTTATTCCCTGATCTACAATACACTGACATGCTTTTCAGCAAAATCACAGGTCTTCTGTCTGTAATTCTCTGCAATGAAAATGCTTGCAGGAGCCAAATTCCTCTGGCATCAGTTATACTTACGCTGTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001676 True 2211 lncRNA 0.40 5 10671852 10682149

Neighbor

gene id symbol gene type direction distance location
XLOC_001043 si:dkey-31e10.5 coding downstream 2416 10667447 ~ 10669436 (-)
XLOC_001042 si:dkey-31e10.1 coding downstream 24368 10642322 ~ 10647484 (-)
XLOC_001041 zgc:174945 coding downstream 31104 10636064 ~ 10640748 (-)
XLOC_001040 trpc5a coding downstream 51393 10486093 ~ 10620459 (-)
XLOC_001039 cnpy3 coding downstream 198222 10462692 ~ 10473630 (-)
XLOC_001045 NA coding upstream 57016 10739165 ~ 10740441 (-)
XLOC_001046 si:ch73-222h13.1 coding upstream 101521 10783670 ~ 10806625 (-)
XLOC_001047 crfb15 coding upstream 127455 10809604 ~ 10821584 (-)
XLOC_001048 dmd coding upstream 142202 10824351 ~ 11075405 (-)
XLOC_001049 BX323090.1 coding upstream 187968 10870117 ~ 10870241 (-)
XLOC_001037 CR854964.1 non-coding downstream 399127 10270247 ~ 10272725 (-)
XLOC_001031 NA non-coding downstream 753040 9916376 ~ 9918812 (-)
XLOC_001024 NA non-coding downstream 1249577 9420824 ~ 9422275 (-)
XLOC_001023 AL954703.1 non-coding downstream 1349921 9308271 ~ 9321931 (-)
XLOC_001018 BX004779.1 non-coding downstream 1473886 9197859 ~ 9197966 (-)
XLOC_001050 NA non-coding upstream 254575 10936724 ~ 10937815 (-)
XLOC_001051 BX004756.1 non-coding upstream 380375 11062524 ~ 11062647 (-)
XLOC_001054 NA non-coding upstream 788641 11470790 ~ 11517353 (-)

Expression


Co-expression Network