G270546


Basic Information

Item Value
gene id G270546
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 184528 ~ 186677 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU307016
TTTTTGGGGGTTACCATTGTGGTGAAGTGTAGAGCATGTGTTTGGGCTGAGGACCTGCTAACAACAATTAAAGTAGTTTTAATAATAAAAAAAACAACTACTTTGGGCATGCCATCCATCTTCTGGCTTGAACTTAATAGTTTTGGACAAAATTAAGATTGTTAACCTGATTCAACGAAATGGCATTGAATTTACAACCTGAATTCCAGAAATGTTGGGACGTTTTTTTAAATTTGAATAAAATGAAAACTAAAAGACTTTCAAATCACATGAGCCAATATTTTATTCACAATAGAACATAGATAACATAAATGTTTAAACTGAGAAATGTTACACTTTGATGCCTGCTACAGGTCTAAAAAAAGTTGGCACGGGGGTAACAAATGGCTGAAAAAGCAAGAAATTGGGAGAACATCTAGCAACTAATTAAGTTAATTGATATCAGGTCTGTAACATGATTAGCTATAAAAGGGATGTCTTAGAGAGGCAGAGTCTCTCAGAAGTAAAGATGGGCAGAGCTGTGAAAGAGTGCATAAAAGGATTGTGGAATACTTTAAAAACAATGTTCCTCAACGTCAAATTGCAAAGGCTTTGCAAATCTCATCATCTACAGTGCATAACATCATCAAAAGATTCAGAGAAACTGGAGAAATCTCTGTGCGTAAGGAACAAGGACGAAGACCTTTTTTGGATGCCTGTGGTCTTCGGGCCCTCAGACGACACTGCATCACTCATCAGCATGATTGTGTCAATGACATTACTAAATGGGCCCAGGAATACTTTCAGAAACCACTGTCGGTAAACACAATCCGCCGTGCCATCTGCAGATGCCAACTAAAGCTCTATCATGCAAAAAGGAAGCCATATGTGAACATGGTCCAGATGCGCCGTCGTGTCCTGTGGGCCAAGGCTCATTTAAAATGGACTGTTTCAAAGTGGAAAAGCGTTCTATGGTCAGACGAGTCCAAATTTGACATTCTTGTTGGAAATCACGGACGCCGTGTCCTCCGGGCTAAAGAGGAGGGAGACCTTCCAGCGTGTTATCAGCGTTCAGTTCAAAAGCCAGCATCTCTGATGGTATGGGAGTCCATAAGTGCATACGGTATGGACAGCTTG
>TU307009
GCCTGCTACAGGTCTAAAAAAAGTTGGCACGGGGGTAACAAATGGCTGAAAAAGCAAGAAATTGGGAGAACATCTAGCAACTAATTAAGTTAATTGATATCAGGTCTGTAACATGATTAGCTATAAAAGGGATGTCTTAGAGAGGCAGAGTCTCTCAGAAGTAAAGATGGGCAGAGCTGTGAAAGAGTGCATAAAAGGATTGTGGAATACTTTAAAAACAATGTTCCTCAACGTCAAATTGCAAAGGCTTTGCAAATCTCATCATCTACAGTGCATAACATCATCAAAAGATTCAGAGAAACTGGAGAAATCTCTGTGCGTAAGGAACAAGGACGAAGACCTTTTTTGGATGCCTGTGGTCTTCGGGCCCTCAGACGACACTGCATCACTCATCAGCATGATTGTGTCAATGACATTACTAAATGGGCCCAGGAATACTTTCAGAAACCACTGTCGGTAAACACAATCCGCCGTGCCATCTGCAGATGCCAACTAAAGCTCTATCATGCAAAAAGGAAGCCATATGTGAACATGGTCCAGATGCGCCGTCGTGTCCTGTGGGCCAAGGCTCATTTAAAATGGACTGTTTCAAAGTGGAAAAGCGTTCTATGGTCAGACGAGTCCAAATTTGACATTCTTGTTGGAAATCACGGACGCCGTGTCCTCCGGGCTAAAGAGGAGGGAGACCTTCCAGCGTGTTATCAGCGTTCAGTTCAAAAGCCAGCATCTCTGATGGTATGGGAGTCCATAAGTGCATACGGTATGGACAGCTTG
>TU307010
GCCTGCTACAGGTCTAAAAAAAGTTGGCACGGGGGTAACAAATGGCTGAAAAAGCAAGAAATTGGGAGAACATCTAGCAACTAATTAAGTTAATTGATATCAGGTCTGTAACATGATTAGCTATAAAAGGGATGTCTTAGAGAGGCAGAGTCTCTCAGAAGTAAAGATGGGCAGAGCTGTGAAAGAGTGCATAAAAGGATTGTGGAATACTTTAAAAACAATGTTCCTCAACGTCAAATTGCAAAGGCTTTGCAAATCTCATCATCTACAGTGCATAACATCATCAAAAGATTCAGAGAAACTGGAGAAATCTCTGTGCGTAAGGAACAAGGACGAAGACCTTTTTTGGATGCCTGTGGTCTTCGGGCCCTCAGACGACACTGCATCACTCATCAGCATGATTGTGTCAATGACATTACTAAATGGGCCCAGGAATACTTTCAGAAACCACTGTCGGTAAACACAATCCGCCGTGCCATCTGCAGATGCCAACTAAAGCTCTATCATGCAAAAAGGAAGCCATATGTGAACATGGTCCAGATGCGCCGTCGTGTCCTGTGGGCCAAGGCTCATTTAAAATGGACTGTTTCAAAGTGGAAAAGCGTTCTATGGTCAGACGAGTCCAAATTTGACATTCTTGTTGGAAATCACGGACGCCGTGTCCTCCGGGCTAAAGAGGAGGGAGACCTTCCAGCGTGTTATCAGCGTTCAGTTCAAAAGCCAGCATCTCTGATGGTATGGGAGTCCATAAGTGCATACGGTATGGACAGCTTGCATGTTTTGGAAGGCACTATGAATGCTGAAAGGTATATAAAGGTTTTAGAGCAACATATGCTCCCTCCAGATGACGTCTATTTCAGGGAAGGCCTTGTGTATTTCAGCAGGACAATGCAAAACCACATACTGCAGCTATTACAACAGCATGGCTTCGCCGTAGAAGAGTCCGGGTGCTGAATTGGCCTGCCTGCAGTCCAGATCTTTCAACTACAGAGAACATTTGGTGCATCGTTAAACGAAAAATATGTCAAAGACGACCATGAACTCTTCAGCAGCTGGAAACATATATCAGGCAAGAGTGGGACCAAATTTCAACACCAAAACTCAAGAAACTCGATGCCTAGACGTCTTCAAACTGTTTTGAAAAGAAGAGGAGATGCTACACCATGGTAAACATGCCCCCGTCCCAACTATTTTGAGACCTGTAGCAGGCATCAAATTTGAAATGAGCTCATTTTGTGCATAAAATTGTAAAATTTCTCAGTTTAAACATTTGTTATGTTATCTATGTTCTATTGTGAATAAAATATTGGCTCATGAGATTTGAAAGTCTTTTAGTTTTCATTTTATTCAAATTTAAAAAACATCCCAACACTTCCGGAATTCGGGTTGTAAATTCAATGCCATTTCATTGAAACAGGTTAACAATCTTAATTTTGTCCAAAACTATTAAGTTCAATTATCCTAAATTAATATCAAACAAACATTAAAACAAATAATCCAGTGTAATTGGTTAGTTTATTTAGTGAATGTCTTTTAGTTTTCATTTTATTCAAATTTAAAAAACGTCCCAACATTTCTGGAATTCGGGTTGTATATGACATATCAAACGTGGGCTCAAATAACATTTTGACATGGACCACAGATAATGTTGTCTAGTAGCTCATGAGAGACATAATAAAGTAACTATGAACAGCTCCAGTCAGAACATCGCGGGTTGCCATCCCTTAAAGGGATAGTTCACCCAAAAATGAAAATTATTCCATGATTTACTCATCCTCAAGCCATCCTAGGTGTTTATGACTATCTTC
>TU307015
CATTTTATTCAAATTTAAAAAACATCCCAACACTTCCGGAATTCGGGTTGTAAATTCAATGCCATTTCATTGAAACAGGTTAACAATCTTAATTTTGTCCAAAACTATTAAGTTCAATTATCCTAAATTAATATCAAACAAACATTAAAACAAATAATCCAGTGTAATTGGTTAGTTTATTTAGTGAATGTCTTTTAGTTTTCATTTTATTCAAATTTAAAAAACGTCCCAACATTTCTGGAATTCGGGTTGTATATGACATATCAAACGTGGGCTCAAATAACATTTTGACATGGACCACAGATAATGTTGTCTAGTAGCTCATGAGAGACATAATAAAGTAACTATGAACAGCTCCAGTCAGAACATCGCGGGTTGCCATCCCTTAAAGGGATAGTTCACCCAAAAATGAAAATTATTCCATGATTTACTCATCCTCAAGCCATCCTAGGTGTTTATGACTATCTTC
>TU307011
TGTCTTTTAGTTTTCATTTTATTCAAATTTAAAAAACGTCCCAACATTTCTGGAATTCGGGTTGTATATGACATATCAAACGTGGGCTCAAATAACATTTTGACATGGACCACAGATAATGTTGTCTAGTAGCTCATGAGAGACATAATAAAGTAACTATGAACAGCTCCAGTCAGAACATCGCGGGTTGCCATCCCTTAAAGGGATAGTTCACCCAAAAATGAAAATTATTCCATGATTTACTCATCCTCAAGCCATCCTAGGTGTTTATGACTATCTTC
>TU307008
CCAACATTTCTGGAATTCGGGTTGTATATGACATATCAAACGTGGGCTCAAATAACATTTTGACATGGACCACAGATAATGTTGTCTAGTAGCTCATGAGAGACATAATAAAGTAACTATGAACAGCTCCAGTCAGAACATCGCGGGTTGCCATCCCTTAAAGGGATAGTTCACCCAAAAATGAAAATTATTCCATGATTTACTCATCCTCAAGCCATCCTAGGTGTTTATGACTATCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307016 False 1116 TUCP 0.40 1 184528 185643
TU307009 False 774 TUCP 0.44 1 184870 185643
TU307010 False 1808 TUCP 0.40 1 184870 186677
TU307015 False 469 lncRNA 0.32 1 186209 186677
TU307011 False 281 lncRNA 0.36 1 186397 186677
TU307008 True 241 lncRNA 0.39 1 186437 186677

Neighbor

gene id symbol gene type direction distance location
CI01000066_00151325_00157474 OPTN coding upstream 28065 151236 ~ 158144 (+)
CI01000066_00109609_00131845 CAMK1D.L, CAMK1D, CAMK1DA coding upstream 54030 109609 ~ 132179 (+)
CI01000066_00063935_00066860 CDC123 coding upstream 119016 63935 ~ 67193 (+)
CI01000066_00043800_00047188 UCMAA, UCMA coding upstream 138454 43492 ~ 47755 (+)
CI01000066_00019553_00029834 PAHX, PHYH coding upstream 155678 19447 ~ 30531 (+)
CI01000066_00273310_00276428 NA coding downstream 86480 273157 ~ 276498 (+)
CI01000066_00300974_00304363 NINJ2 coding downstream 113559 300236 ~ 304408 (+)
CI01000066_00344664_00393673 NA coding downstream 157987 344664 ~ 394325 (+)
CI01000066_00400218_00405333 NA coding downstream 213103 399780 ~ 405603 (+)
CI01000066_00419486_00436877 NA coding downstream 232241 418918 ~ 437551 (+)
G270545 NA non-coding upstream 1782 184196 ~ 184427 (+)
G270525 NA non-coding upstream 6032 63222 ~ 180177 (+)
G270531 NA non-coding upstream 128512 48452 ~ 57697 (+)
G270547 NA non-coding downstream 8009 194686 ~ 196431 (+)
G270567 NA non-coding downstream 38457 225134 ~ 275259 (+)
G270586 NA non-coding downstream 65396 252073 ~ 252391 (+)
G270587 NA non-coding downstream 66977 253654 ~ 257325 (+)
G270594 NA non-coding downstream 79199 265876 ~ 267641 (+)
G270973 NA other downstream 1657775 1844452 ~ 1847752 (+)
CI01000066_02274624_02277624 NA other downstream 2082492 2274557 ~ 2278119 (+)
CI01000066_02296138_02305439 CMAH other downstream 2115533 2296071 ~ 2305637 (+)
G271105 NA other downstream 2244033 2430710 ~ 2439169 (+)

Expression


Co-expression Network