XLOC_010443 (snrka)


Basic Information

Item Value
gene id XLOC_010443
gene name snrka
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 8047896 ~ 8132742 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020516
ATGGCAGGAATCAAGCGCGGGTATGACGGGAAGATCGCCGGACTGTATGACCTGGACAAGACATTGGGCCGCGGGCATTTCGCCGTCGTCAAACTAGCACGTCATGTCTTCACCGGTGAAAAAGTGGCAGTCAAGGTAATAGACAAGACCAAGCTTGACACGGTCGCGACCGGTCACCTCTTCCAGGAAGTCCGCTGTATGAAACTGGTCCAACATCCCAACATCGTTCGGCTCTATGAGGTCATCGACACACAGACCAAACTCTACCTGATCTTAGAGCTCGGCGATGGTGGCGACATGTTCGATTACATCATGAAGCACGAAGAGGGACTGAACGAAGAACTGGCCAAGAAATATTTTGCGCAGATTGTGCACGCCATCTCATACTGTCACCGCTTACACGTGGTTCATCGTGACCTAAAGCCAGAGAATGTGGTGTTCTTTGAGAAACAGGGCCTGGTCAAGCTCACCGACTTCGGCTTCAGTAATAAGTTCCAGCCAGGAAAGAAGCTGACCACCAGCTGTGGCTCGCTGGCTTATTCTGCCCCTGAGATCTTGCTGGGAGATGAGTACGATGCACCTGCTGtggATATCTGGAGTCTCGGGGTCATCCTCTTCATGCTGGTGTGCGGTCAACCCCCCTTCCAGGAGGCCAATGACAGCGAGACCCTCACTATGATTATGGACTGCAAATACACTGTACCTGCCCACGTCTCAAATGCTTGCAAAGACCTGATAAACCGAATGCTTCAAAGGGATCCAAAGAGGCGAGCATCGCTGGAGGAGATTGAGAGCCACGCGTGGCTTCAAGGGGTGGATCCATCTCCAGCCACCAAATACAACACTCCTCTGGTGTCTCATAAGAATCTTTCTGAAGAGGAACACAACAGCATCATCCAGCGCATGGTCCTGGGAGATATCGCAGATAGAGAAGCCATCGTCGATTTCAGgaacacaagtacccaatttcaacagTCTTTGAAAAACATTATTTGCTACAGCTTTTatttcacTTGCACCCttgtcaaacacacc
>TCONS_00020517
acacacacactgatcagtactaaacctcacacacacacgcacacacacacggggCTGGACTCACAATCAGCCGGGTCTTACCATTGCCGTCTTCGGCTCCACAGCCGCCTGAACATTTGGGAATTTCAAGTGGTTTTAATGTTCGCCAGAGCGAGCGAAACCTGCCATCATGGGATTGCAATTACCAGCCAATGTGCTGAAGTGAGCTGGATTTTTCCTCCAGTTtaagccccgcccctcccccagGGGCCACTCCCCCTCCATCCCACCGGAGGACCAGCAATCATGGCAGGAATCAAGCGCGGGTATGACGGGAAGATCGCCGGACTGTATGACCTGGACAAGACATTGGGCCGCGGGCATTTCGCCGTCGTCAAACTAGCACGTCATGTCTTCACCGGTGAAAAAGTGGCAGTCAAGGTAATAGACAAGACCAAGCTTGACACGGTCGCGACCGGTCACCTCTTCCAGGAAGTCCGCTGTATGAAACTGGTCCAACATCCCAACATCGTTCGGCTCTATGAGGTCATCGACACACAGACCAAACTCTACCTGATCTTAGAGCTCGGCGATGGTGGCGACATGTTCGATTACATCATGAAGCACGAAGAGGGACTGAACGAAGAACTGGCCAAGAAATATTTTGCGCAGATTGTGCACGCCATCTCATACTGTCACCGCTTACACGTGGTTCATCGTGACCTAAAGCCAGAGAATGTGGTGTTCTTTGAGAAACAGGGCCTGGTCAAGCTCACCGACTTCGGCTTCAGTAATAAGTTCCAGCCAGGAAAGAAGCTGACCACCAGCTGTGGCTCGCTGGCTTATTCTGCCCCTGAGATCTTGCTGGGAGATGAGTACGATGCACCTGCTGtggATATCTGGAGTCTCGGGGTCATCCTCTTCATGCTGGTGTGCGGTCAACCCCCCTTCCAGGAGGCCAATGACAGCGAGACCCTCACTATGATTATGGACTGCAAATACACTGTACCTGCCCACGTCTCAAATGCTTGCAAAGACCTGATAAACCGAATGCTTCAAAGGGATCCAAAGAGGCGAGCATCGCTGGAGGAGATTGAGAGCCACGCGTGGCTTCAAGGGGTGGATCCATCTCCAGCCACCAAATACAACACTCCTCTGGTGTCTCATAAGAATCTTTCTGAAGAGGAACACAACAGCATCATCCAGCGCATGGTCCTGGGAGATATCGCAGATAGAGAAGCCATCGTCGAAGCCCTGGAGACAAACAAGTACAACCACATCACTGCTACTTACTTCTTGTTGGCTGAACGGATCCTGAGAGAAAAGCAGGAGAAAGAGGTGCAACCTCGTTCTTCCAGTCCCAGCAACATCAAGGCCCAATTCAGGCAGTCATGGCCAACTAAAAATGACTTGCATCAGGACATTGAGGACAGCTTAGCTTCTTCATCTATTTGTCATGCTGGGGGTCCACAGTCTCCAGCTCGCAGTGCAGAGAACCTGCTGAATGGTCATCGCAATAAAGGACTTTTGGAAGTGAGCCGCAGAGAGGAGATCTGCGAAGCTTCCAGCAGCTCTCCTGCACCTGCTTCTCTGCCACCAAACCCCCTTAAGCCTGGGGTCATGGCCCCACTTGCATCTGCTTCAGCCAAGCAACGAACCTGCCTCTTTCGAGTGGAAGaagatgaggaggaggaagaagaacaGGAGCCTTCACCGTTGCCCACACAGGTCGTATTGCGGCGCAAACCACTGTCCATCACCAACCGGCTGACATCTAGAAAAAGTGCCCCAGTGCTTAATCAGATCTTTGAGGAGGAAGGAGAATCAGATGATGACTTTGACATGGACGAGAGTCTTCCACCTAAGCTCAGCCGGTTGAAGATGAACATGACATCTCCAGGTACAGCACAGAAGCGCTACCCCCGGCGCAAAAGTCAGGGCCGTGGTTCCAGCTGCTCAAGCTCCGAAACCAGTGATGATGATTCAGAGAGTCATCGTCGACGACTAGACAAAGACACAGGGTTCACCTACAGCTGGAACCGCAGGGACAGTAGTGAGGGTCCGCCTGGAAACTCTGGGGGTAATGGGGGTGGCAGTAGCGGAGGCCAAAGCAAACCACCTGGGGAAGGTAACTCAGGACCAGACAAGGGCAGTCCTCCAGGGGGAGGCAGTGGTGGTAGTGCAGGAGGGGGAGGTGGAGGTGGTGGAAGTACAAAAGGACagggaggcccttccagctgctcccgcagcagcagcaacaacaacaacgctTCATCTGGCTCATCACGTAGTGCAGCTCGAAGCGCAGGGGAACTAGTAGAGAGTCTAAAACTCATGAGTCTCTGCTTAAGTTCTCAGTTTCAGCATCGCAGCTCTGGAGGAGGTGGTGGCGGACGGTTCATCCTTGATCCTCAGAGCCTGTCCAGCGTTAAAGTCCAGGAGAAGTCCTCCTGGAAGATGTGCATTGGCTCCAACAACAGTCTAGATAAAGTTATCAACCCTGCCTTGAATGGTGGCGTTGGTGCAATGGAGCATTATCAAGACCAAACAGCAGTCATGTTAAATGAACTTGGCCTGGTCAAAGAGAACAATCTGAACTTGAAAAATAATGTTCTCCAGCTACCTCTGTGTGAAAAGACCATCTCGGTGAACATCCAGCGAAGCCCCAGGGATGGGCTACTCTGTGCCTCAGCCCAGGCCAGCTGCTGCCAGGTCATATGACGGCACGGCTCACGATTGGTTCACAGAGTCGGATCGTTCCTATTGCCACATTTGTAGCATATGATGACTTGAGTTCTCCACCAGTAGCTGTATATGACCTCTCTTGATCCCAACTTGACCTTTAAACCTGCCTTCTATGTTGTCTTAATCATTCTCACAACTTATTTATTAAGTTTCTTCTCTTGGACCCATTGGTTTTTAATGAAGTGCACGCTGCTAGTCTGAACttttttttgtgtctttattgTTTTGCCCAATTAGACTTTAGTGTAATTTGGTATTTATTTCTGGTTATTGTCCTTTTATAGCCCTTGAAATGAAATGCTCTGAACATGAATTCCATGTTTCCAACGCCACTCAATCAATCAAGATTTGCGGAAGCCGTGTGTGTAAAATGACCCTTAATAAACTGGAATTTAAATAAGACCAATAGGATGTTCGAGCAAGATGTGGCGATTTTTAAAACAAGCACTTAAAAGAAGTTCAGCCTATAAATACCACAAGTCATTTTGTAAATGGAAGCCCAGATGTGATTGTAATGAGATGGTTATACAGTAAAAGCAATAGTGAGAGTAGAGAACGAAACTTGTTTTAATTCATAGTGCTGTCTGATCAGTCTTAAAGTCAACGACCATTTTGGGATTGCTTCACCATTTTTAAAGTGCTATTGACTGTTTCCGTTGATAATCTTTAGtatagatcagtggtcaccaaacttgttcctggagggccggtgtcctgcagattttagctccaaccctaatcaaacacacccgaacgagctaatcaaggtcttgctaggtgtacttgaaacatccaggcaggtgtgttgaggcaagttggagctaaaccctgcagggacaccggccctccagaaccgagattGGCGACCCCTGGTATAGATGAACATTGAGGTTCGTGACAATCAGTTGCAATAACAAGGGAAATGTTTAATAGGGAATTTCCAAAAGGAGGTTATGATTATTGCCGATATCTTGTATTTGTTTCTTAAAATATCACGACATTCACACGTTCCACATGTTCTTAATCTACATCACCGTTTGGTTTGGTTGTATATTTAAGGAAACGTTTGGGATTTAAGTGCAATTTATAGTCAAGCTGGTCAATTTAACAAGCCCACATGCGAAATGCCCTCTTAAGTAATAATGTTTTGCCAAATTTGCATCCCAGACAGCACTGTGGATACACCCACACGTAAATGCAATGCGTTCTTATCGAATTATAAACTTACAAATTCACTACGGTGCAAGTAGAGTCTGCAATTAGGATACTTTAAACACCATTCAAAGCTCAGTGGGGGTAATTAGCCTTTACAATGCTGTCTCTGCCGGAGTAAAATCAAACCCGCAGACAGTGATAGTATTCAGCTGGTGTAGTTCTGAATATTTTAATGGGAATCGTTAAGCCAGTGGCCCTATTTCTTAACGTCGTTATTACAGATAAAATCTGAATGGAGAGAAGTGATTCCTTGGCTTGAGAAATCGTTGTCGTTTATTCTCTCACCACTGTTGTTCTTGTACAATTCAGCTTCGAGTTACTGTATATACCAGTCTCAGAATCGACTGGCCTTAGGGTCTGTTTATAAGtatgtacatatatttttttaaaagtttattttttttaaaggactgctgttttaaaatgctgttttggATGTGAGCCTTAAACCGGCTCGTTAGATGGAATGAAACGGggcttttttttttgacaacatAAATGGATTATCTTCTATTCAGCGGATGGTCAGTCTTTTTATTCAAGAGTTGGCCATCGGGTGACCATCAACTTGGCATAGAAATAAAGCTCTACAGGACTGCGAGTGTGAAAGGTGATCGGTTGTGAGATTTTAAGGGCATTTGCAATAAGCTAAGCTATAAGTTGCAGCTATATGTAAAtatcagttttgtttttgtttttatatttcaagCCTGTACATCCTTCAAATGGCTCACTTGACCCAAATTTATCTTAagtatttctgtttgtttttgtctttttcgtttttaaaaataaaagtgtgtaaATATTGGTGTAAATATGGTGCTCTACACTTAGAAATGCAGTGTTGGACTTCTTGTTCATAGCTGTGATATAGCCTTATTAGATATGAGTGTCAAATACAGAGCaggtttaaaaggaaaaaaaacaaaaaacccagTGCTGTATGCATAATGTTAGTCTCTGACTTTGTCCTACCCTAATGTAAACAGCTAAACGACATGTGCATGTGTTGTGCGTTTGACATTACTGATCCACGTTCGTTCAGAGGAGAAGAACCACCACAAAAATGTTACAGGACCAAACCATGTACTGAcgttaaaagaaaaagaaaaaaaaacacctttgaaGAAGCAAAATGGATAAATGTTCTGTTGCTGAAACTTGTCTTTAAAAGTTACATATAGCTATGGTGATGTCcgaaattaaatgtgaaatatgttGTCTTTAAA

Function

symbol description
snrka Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and protein phosphorylation. Predicted to act upstream of or within phosphorylation. Orthologous to human SNRK (SNF related kinase).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-84 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and protein phosphorylation. Predicted to act upstream of or within phosphorylation. Orthologous to human SNRK (SNF related kinase).

Ensembl:

ensembl_id ENSDARG00000070832

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020516 False 1035 mRNA 0.51 10 8047896 8120203
TCONS_00020517 True 5171 mRNA 0.45 6 8051261 8132742

Neighbor

gene id symbol gene type direction distance location
XLOC_010442 CU856516.1 coding downstream 62995 7968020 ~ 7984901 (-)
XLOC_010441 NA coding downstream 166619 7834219 ~ 7881277 (-)
XLOC_010440 tcaim coding downstream 219048 7802730 ~ 7828848 (-)
XLOC_010439 trim71 coding downstream 254439 7742658 ~ 7793457 (-)
XLOC_010438 BX511173.1 coding downstream 351680 7693881 ~ 7696216 (-)
XLOC_010444 NA coding upstream 7970 8140712 ~ 8142312 (-)
XLOC_010445 gask1a coding upstream 55446 8188188 ~ 8251985 (-)
XLOC_010446 entpd3 coding upstream 125461 8258203 ~ 8280885 (-)
XLOC_010447 CR478208.1 coding upstream 155029 8287771 ~ 8288447 (-)
XLOC_010448 ddc coding upstream 165800 8298542 ~ 8342749 (-)
XLOC_010626 CR392024.2 misc upstream 12762370 20895112 ~ 20895175 (-)
XLOC_010436 NA non-coding downstream 426781 7508101 ~ 7621115 (-)
XLOC_010430 AL845419.1 non-coding downstream 1218261 6828552 ~ 6829635 (-)
XLOC_010450 CU062417.1 non-coding upstream 346138 8478880 ~ 8479009 (-)
XLOC_010452 NA non-coding upstream 536239 8668981 ~ 8679462 (-)
XLOC_010455 CR394537.1 non-coding upstream 1169337 9302079 ~ 9302194 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_10799559_10842613 SNRK, SNRKA coding CI01000016 null 10799185 ~ 10843409 (-)
bowfin (Amia calva) AMCG00002541 snrk,snrka,LOC107551216,LOC107723077,LOC107601674,LOC107657578 coding CM030136.1 CM030136.1 18383820 ~ 18389641 (-)