G271620



Basic Information


Item Value
gene id G271620
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 518309 ~ 520950 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU308260
AAGAAAGAAAGACATGAACATCTTGGATGACATGGGGATGAGTAAATTATCAGGAAATTTTAATTCTGAAGTGAATTAATCCTTTAATTAATATTTAAGATTTTTGGAGTGTAGTACCGTACTTTTTGTCATCAGAATCTCATGAGAAACACCATTGAGAATGGTGTGAATTACAATAATAATAATAATAATAATAATAATAATAATAAACAATACATATGCCTTGATAAATTTAAGGGAAAATGTTGCTGTGATGAAAATAATGTTGCAATAAATTTTCCTGATGATTTTGGGGTGAAATGTGACCTAAATGTGTTTTCATGAGATTCACTCAACTACTCTTCTTTTATTCTAAATAATTTAAAGAGACAAACAAACATGAATCTCTAGAGGACAAATGTGTATTAATTATAGGTGACTCACAGAATGACTCAGAGGTCAATCAAATTTGGGCAAAGCAAACGTTTGGCCCAACATCACGTGGCTGTTTTCTAGTGAGTATGGGCATGAGGAGAGGTGGTGTGGTGATATGGGAGCATGTGGGAGAGAGATGATTATATTCGCTGTGATCTTGTGCTGTTTGTCTTGTCTGTCGAGCTTATCGTGCAGAGAGGAGTATGACTAACACGGCACAGCAGGTCAGAGCCATAAACTACACACAGGCATGAATGAGGGAGGGATGAGGAGATATAGAGAGAGAGGAGCAGAGGGCACGTTACGCCCAGTGTCATCCACAGGGGAAGTTGACTCTGGACTTTAAAGCAACGGCCGATCCGCATGATGAGGCAACCGCGAGTTATTATTGCGAGTTGAATGAGGTTGAGTCTTATCACTCCTGCGGCCGGTCCAGAAACGGACACCCAATGCCAGCGGATATAGACCCATATAACCATAAAGTGAAAAAGGATACACCTGCCGGCTGTGCTAACAGAGACGCCCGGGTCTGAGGATGATAGAGCATGAGAGAGAAGCATGATGGTACATGTGAGATGCTTGGGATCAAAGCTTGATGTTATCTCTGATGGGGTGATCACAAAGCAACCACAAAAAACAAGTTGCATCTGTTTAAAAAAAGAGAGAGTGGAATAAAGAAGAGGTTATCTAAACAACTACTCTTATTTGATCCTATCCATCAAAAAAAAGAACAACTCTTTGCTTTGGAAAAGCGAGCAAACTGAGAAACTACAGCCAGCCTTCATCCCAGTGTGAGACCACATAGTTTTCAGAGTACGGAATGAGTGATAGGTGCCTATTTTCCTATTCCAGTGATGTGTGGCAGCTGCTCTCTGATGATGAGGCACTTCTGCGTCCACAACATCTGCGTCGGCAATACACTCTCTGTTTTACCGCCCTCGGCATCAGAGAGCCGGCCACGGGGGAAAAAATAAAAGAAAAACATAACCAAACCAAACCTGCCACATGCAAAGACAAATGTTAGCAGCAATAAACCTACAACTTCCAAGGCAAATAATTTTCTTCCTCTCACCTTTAACAGACACAAACCAGGGCTGTGGTTTCTTTAGCTGGTGACAGGTGCATACGGGATAACATTACCCATATTGTCCGTTTCATAACTTTTATGAACGAGACTTTGGGAGAAAATCGGCCAGTAACCAAGTCAATAGTGAATTCCCAGATGGTGGGGGCTGCGGTAATCTAAACCTGCTACTGACTACGATAGTAAAAGTATGTTCAAGTCCGCACGGACTGTCTGCTGGCACAACCGAAGCATTAACCAAGTTTTGAGTGAAACCAGATGGTTTCGAAAGTGCAGGAGTTTTGCCCTGCGCGAATGACCCATAATTTAACATCAGTAACACAGAGAGAACTCCACCTCCTGCAGGACGGCTTTCAGAGACAGACAACTAAATAAGTGAACATGTCTTATAATACTGAGCTTCTCTGATGCTCTTTTCCCCCTTTCGGTTCCTTCTTCCTTCTTACCCGTGTTTATGTGAGTGTAAACAGGATTCTGAAGGTGCAGAGAGGATGAATGTGGTGGTAGGGGATGGCAGAAGGAAAGCCCACCATTCCCACACCCTAAAGCCAATCCAAGCGTGCACCTGACTTGTGAGCTGTCAGTCTCTCCCGTATGTGTTTGTCCTTTGAATTGTGCATGTGGGTGAGGGTGAGAGAGTTTGTGTTCTGGCATCCTGTGAAATGAAGTGAAAAACAGCAGAAGAAAGGGAAGGAGAAGCAGGAAGTGGGGAGGCGGCAGGACTGGGTTTTCGCGGTGCAGTGCGGTGTGGTCCAGTCAGCACGACTCCTCCAGAGCGTTGACCACCTGCTCCAGTATGTCCGGGCAGTGATCGGCGATCTGCTGCAGGACAGAGTTGGCGTATTCCTGCAGTTCGGCGCTCTCTCGTTCACACTGCTCCAGCTCAGATTCCAGCTGAGGAAACACGGAAAAAAGGATTTATTAATATTACATTTTATATATATATATATATCATCCTTAATCATTCTGTTTTTTGATATTTCTAATTAGGCTGTAAAATGC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU308260 True 2500 lncRNA 0.43 2 518309 520950

Neighbor


gene id symbol gene type direction distance location
CI01000066_00438633_00446467 NA coding downstream 71608 438001 ~ 446701 (-)
CI01000066_00409321_00410208 NA coding downstream 107456 409022 ~ 410853 (-)
CI01000066_00250654_00271679 NA coding downstream 246404 250604 ~ 271905 (-)
CI01000066_00196094_00242947 WNK1B, WNK1 coding downstream 273081 195852 ~ 245228 (-)
CI01000066_00179779_00180183 NA coding downstream 338020 179721 ~ 180289 (-)
CI01000066_00535081_00543543 NA coding upstream 13958 534908 ~ 543917 (-)
CI01000066_00597946_00601637 FBXL13, FBXL14B, FBXL14, FBXL14.S, FBXL14A coding upstream 76760 597710 ~ 601637 (-)
CI01000066_00642830_00643160 NA coding upstream 121568 642518 ~ 643249 (-)
CI01000066_00675433_00675726 NA coding upstream 153931 674881 ~ 676211 (-)
CI01000066_00679999_00685380 NA coding upstream 158702 679652 ~ 685380 (-)
G271745 NA non-coding downstream 61899 455635 ~ 456410 (-)
G271623 NA non-coding downstream 216589 300957 ~ 301720 (-)
G271614 NA non-coding downstream 241044 277033 ~ 277265 (-)
G271583 NA non-coding downstream 330430 186928 ~ 187879 (-)
G271560 NA non-coding downstream 478095 39155 ~ 40214 (-)
G271802 NA non-coding upstream 19417 540367 ~ 566360 (-)
G271818 NA non-coding upstream 47331 568281 ~ 569175 (-)
G271788 NA non-coding upstream 98757 619707 ~ 623728 (-)
G271838 NA non-coding upstream 107311 628261 ~ 629754 (-)
G271774 NA non-coding upstream 128509 649459 ~ 662102 (-)
CI01000066_01823227_01826380 NA other upstream 1302079 1823029 ~ 1826817 (-)
CI01000066_01843043_01848783 NA other upstream 1320729 1842554 ~ 1849466 (-)
G272221 NA other upstream 1438152 1959102 ~ 1985228 (-)

Expression



Co-expression Network