G270801



Basic Information


Item Value
gene id G270801
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 1057009 ~ 1058689 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU307314
AGACGTCTACAGTACAAAAACATGTGCATCCTTCTACCAGTGTGGGTGGACAGAAAAACTGGCTTTTGTAAGTTCTGCTGAACATCATAGTTTGCTATCTAAAGATTTGTAGATGTAATTGTTGGAGAGACATTATGGATTCTGAGGCCAGATACCAGGAGATCCTTGCTATCTCTCTCTCTCTTCATCATTCATTTATTGAAGAAAGTGAGACAGAGAGCTTGTAGGGTGATTGATTCTGGGGCCAAAGAGCCACTTTTGAAGGATGTCTTTGGTGTTTTCCCCGTAGGTCGTGATTGCTCTGAAATAGATGTAAAGAAAAATGTTCAATTTCATTAAAGCTCAGGGTGTTTGAAGATCGGCATATCTACCTCATTAAAAAGGAGAAGGCAAGTAGAATATAGACAAGAAAGTGTAAGTTGTGGGAATGTTTGGAAGTTTCTTAAAGGAATAGTTCTTCCATAATACTCTTCTTGTCTTTAATTCCAAACCTGTTTCTTTCTTATGTGAGACCCAATAGGAGTTATTTTGAAGAATGTTCAACCTCATTTTTTCCAGCGGAAGTGAATGGGGATGGGGTCTGTCAAACTCCTAAAATGAAATAAAAGCACCATGAATGAATCATAAAATAGTCTATATGACTTATGCGCTATATTCCAGTTCTTCTGAAAGTTAAAAATTTAAAGGGGTGGTTGATTATGATTTCACTTTTTTAACTTTAGTTAGTGTGTAATGTTTCTGTTAGAGCATATGACGCTGAAGGTTCAATGCAAAGGGAGATATTTTCTTTTAGAAATCACTTTTTAATGACTACAACAAATGGCTGGTAGGGACTACAACAAGCTTCTTCCCTAGTTGGTGACATCGCTAACACTAAAATTTACATAAACCCTGCCACCAAAAACACAACAAAGGGGGTGAGGCCATGTTGGGCTGCTTTAGAGAAGAGGAAGAGTTTTTGCCATGCCGTCATTTTACACCGGACTAACGAGGGTCAATTCAGAGCTGGATTTGCACAAAAGATTAACATGACGGCACATGCTAGTCGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAATGTCCAGATGAATTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCCGACTCCGGTTTGAATAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACCGAAGCGTGAGCTGTTAAAGCACCGCCCTCTTCTGGAAAGTGGGCCGGGAGCAGCAGCTCATTTGCATTTAATGGGACACACACAAAAAAGGCGTGTTTTTGCTCACTCCCAAATAGGGGCAAATTTAAGAAGCTATAATAAATGATCTGTGGGGTATTTTGAGCTAAAACTTCACAGACACATTCTGGGGACACCAGAGACTTATATTACATCTTGTAAAAGGGCCATAATAGGTCCCCTTTAAGTTGCTATTCATGGAAATATTGAATAGCAAATCTTATTTGCTTTATAACCTGTAGCCTGCTCAACAAACTTTGATGAAGCTGGTTATTCTTCACTTGATTCATCATGCGTCATCCCGTCCGTTCACATCTCAACCCATTCCAAAACTTTCTGTATCATGACCTGCTAATTCCCAGTGAGTT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU307314 True 1681 lncRNA 0.39 1 1057009 1058689

Neighbor


gene id symbol gene type direction distance location
CI01000066_01024399_01028864 NFYB, NFYBA coding upstream 28120 1024399 ~ 1028889 (+)
CI01000066_01021163_01021546 NA coding upstream 34379 1020687 ~ 1022630 (+)
CI01000066_01015249_01016975 NA coding upstream 39675 1013769 ~ 1017334 (+)
CI01000066_00941480_00966469 SLC41A2B coding upstream 90538 941480 ~ 966471 (+)
CI01000066_00925751_00935641 ALDH1L2 coding upstream 121157 925751 ~ 935852 (+)
CI01000066_01110448_01145292 SRGAP1A, SRGAP1B, SRGAP1 coding downstream 51661 1110350 ~ 1145983 (+)
CI01000066_01165569_01184166 IPO8 coding downstream 106880 1165569 ~ 1185012 (+)
CI01000066_01187709_01232765 TMTC1 coding downstream 128607 1187296 ~ 1232765 (+)
CI01000066_01236972_01244870 NA coding downstream 178283 1236972 ~ 1245112 (+)
CI01000066_01245954_01257380 NA coding downstream 187265 1245954 ~ 1257380 (+)
G270803 NA non-coding upstream 48199 1008046 ~ 1008810 (+)
G270695 NA non-coding upstream 228469 787249 ~ 828540 (+)
G270675 NA non-coding upstream 301623 755058 ~ 755386 (+)
G270646 NA non-coding upstream 378907 673828 ~ 678102 (+)
G270827 NA non-coding downstream 826 1059515 ~ 1059734 (+)
G270831 NA non-coding downstream 15530 1074219 ~ 1074706 (+)
G270855 NA non-coding downstream 264806 1323495 ~ 1324025 (+)
G270864 NA non-coding downstream 295426 1354115 ~ 1355390 (+)
G270877 NA non-coding downstream 340884 1399573 ~ 1399784 (+)
G270546 NA other upstream 870332 184528 ~ 186677 (+)
CI01000066_00019553_00029834 PAHX, PHYH other upstream 1036736 19447 ~ 30531 (+)
G270973 NA other downstream 785763 1844452 ~ 1847752 (+)
CI01000066_02274624_02277624 NA other downstream 1210480 2274557 ~ 2278119 (+)
CI01000066_02296138_02305439 CMAH other downstream 1243521 2296071 ~ 2305637 (+)
G271105 NA other downstream 1372021 2430710 ~ 2439169 (+)

Expression



Co-expression Network