G270901


Basic Information

Item Value
gene id G270901
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 1690130 ~ 1698632 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU307444
CAGCGGGAATGCTGAGTCATAAATCCCATTAGCAATCAGCGTGGTGATACCCATGGTTTGGCAGGTCCGTGCGCAGGCGGTGCGTCTGAGGATTTCATACACTATTCGGCTCCTTGTGGCATTGTCGAAGAAGGTGTCCTTTGACTTGATGTTGTACAGGTGGAGCTTGTCCCGGGAGAAACAGTGAGAGAGAAACTTGGTCCGGCTGTGCTCTTCCTCCTGATGGGGTACTTTGGGCTGGAACGGTTGATTTAACTTGCGCCACACTTCGTTCATGGTGGCCGCCAGACCTTTTTCTTCCCTCAACTCGTAACTCTGAACAAGAGACAAAATTTTTACGGTCAAAATCAGCAACAAAGCATCAGATCATCAATCAGC
>TU307442
CCTCTTTATCACGCTCAATTTCCAGCCCAGCATCCTTTAAATTGCCTTCAAACTCCTCTCGGATCATGATTTTCTCCCCATCGGCGGGGTCCGGGGGTCCGACGTCCACCACCACCTCCGCAGGTTCATCCTTCCCTCCCTCTGGGTCTTTTTCCTCCATTCCTAAAGGATAACTACCATTGGAGATGGTGGACAATCTGTGTTGACTAGGAGAGCCCCTGACGAAGGAACGTTTTCGGTAGTGGTACACCAGCACATAGTCCACTTTCCTTCGGCCGTCAGCAAAGTACAGCCGTTTGCGAGGGTCCTGGTCCACGTCCATCAGGCTATTGGCCACCTGAACAGCATGTTGTCACACTTAAAGAAAAACACAAAAACAAGATGAAACTGCAACAGTTCCTCGGCGTTCCCGGGAAATTGTGTGTGTTTCTGGTGGCATGCCCGTTTCTGATGTCACCCTACAGAGACGGCACCATCCATCTTTCCCTCTGTTTATCCATCGATCTCGCAAAGCATGAAATCCATCCGTCTGTCTGATTTTGGCACCGTTGACTGGGAAGCGCAAAGCTTTGCTTCACGCACAACAGAACGCATCTCCACAGAAACTTCTGATTTGTCCCTGACTAATTGTCCCTGGAGGAATACCTGCGCGTCTCCAAGCGCCAGAGCGCATCATTACGCGCCGGAGGGGCTTGCGCGCGCGTGTAAAGATGGAGTCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307444 False 378 lncRNA 0.49 4 1690130 1691567
TU307442 True 720 lncRNA 0.52 2 1697572 1698632

Neighbor

gene id symbol gene type direction distance location
CI01000066_01640177_01643928 NA coding upstream 44332 1640177 ~ 1645798 (+)
CI01000066_01589883_01604443 TBC1D30 coding upstream 85032 1589883 ~ 1605098 (+)
CI01000066_01578097_01581661 NA coding upstream 108354 1578097 ~ 1581776 (+)
CI01000066_01567921_01573802 RASSF3 coding upstream 115887 1567877 ~ 1574243 (+)
CI01000066_01528166_01534032 NA coding upstream 156027 1528166 ~ 1534103 (+)
CI01000066_01709877_01712786 NA coding downstream 11027 1709659 ~ 1713079 (+)
CI01000066_01713419_01715550 NA coding downstream 14787 1713419 ~ 1715886 (+)
CI01000066_01762973_01769561 NA coding downstream 63441 1762073 ~ 1769643 (+)
CI01000066_01784212_01786444 GCP, OSGEP, OSGEP.L coding downstream 84995 1783627 ~ 1786506 (+)
CI01000066_01793494_01798848 NA coding downstream 94567 1793199 ~ 1799418 (+)
G270902 NA non-coding upstream 2932 1673414 ~ 1687198 (+)
G270720 NA non-coding upstream 282119 1404775 ~ 1408011 (+)
G270877 NA non-coding upstream 290346 1399573 ~ 1399784 (+)
G270864 NA non-coding upstream 334740 1354115 ~ 1355390 (+)
G270855 NA non-coding upstream 366105 1323495 ~ 1324025 (+)
G270931 NA non-coding downstream 26971 1725603 ~ 1727443 (+)
G270923 NA non-coding downstream 90964 1789596 ~ 1791364 (+)
G270972 NA non-coding downstream 143054 1841686 ~ 1848013 (+)
G271015 NA non-coding downstream 220829 1919461 ~ 1919727 (+)
G270978 NA non-coding downstream 234982 1933614 ~ 1936072 (+)
G270546 NA other upstream 1503453 184528 ~ 186677 (+)
CI01000066_00019553_00029834 PAHX, PHYH other upstream 1669857 19447 ~ 30531 (+)
G270973 NA other downstream 145820 1844452 ~ 1847752 (+)
CI01000066_02274624_02277624 NA other downstream 570537 2274557 ~ 2278119 (+)
CI01000066_02296138_02305439 CMAH other downstream 603578 2296071 ~ 2305637 (+)
G271105 NA other downstream 732078 2430710 ~ 2439169 (+)

Expression


Co-expression Network