G270923


Basic Information

Item Value
gene id G270923
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 1789596 ~ 1791364 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU307471
TGTGCAACCTTAATTATATCATCTTACCTTGTGTGTGATACTCCAAGGCTTCCTCCAGGTGGCGACAGCTAAGCAGCAGCTCCTCCGAACTCTCAGAGCCTCTCAGGACCTGATTGGGCAAAGACTCGGAGGGTTTTACAGTAACCTCTCCAGCTACTGGGTGGACAACCGGACTCTTCTCCTGAGGAACATCTGCCTCTGGGCCATCGCTGATGAAACTCAGTCCCCATTGGTTCTGCAGCAAAACCCCAATACCAGGTGGCTCTTCTGCCGCCCCAACAGAACCTCCTCCCGCCTTCACCTTGGAGGCGTAGCTGACGGCCGGCTGCAGTTTGGCGGGGCTGTCTTTCACAGGGAAAGCAGGTGGAGGTTTGAGCAAAGACAAGCTGTTGTCCACCCATCGTTCTTTCAGACCGGTTCTGGAGTGTCTGTCATCTGAACGTGGCCCTACTCTCGGGCCATTTTGTCGAAAGCTTCTCACTTTATTCGGGGTGCGACGCTCTCTGTCGCGGCTCGATGTGAAGGTCTGGGTGTGGCCCACCCCGTTGAGAGAACCTTCCAGGCTACTTGGGGAGGCTTGACGTTTATCCATCCCAGAGGAACAGCCCCCTCCTCCCCCACCGCAGCTGCCAGAGCCAGGGGAGAGGCGACGGTTTCGGATCTGTGGTTCTGATTTAGTGGGTGACACTAGGACGGCCGGATCACACAAGGGGTCGGACTCGCACACTGCATTTCGATGTGATAAATCCGGGTTTTAAAAGCGGTTTGGACTTTAGTGTGTGTACGTGAGTGTGTCGCGCAGCGGCGTGTTGCTTAATACGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU307471 True 822 lncRNA 0.55 2 1789596 1791364

Neighbor

gene id symbol gene type direction distance location
CI01000066_01784212_01786444 GCP, OSGEP, OSGEP.L coding upstream 3090 1783627 ~ 1786506 (+)
CI01000066_01762973_01769561 NA coding upstream 19953 1762073 ~ 1769643 (+)
CI01000066_01713419_01715550 NA coding upstream 73710 1713419 ~ 1715886 (+)
CI01000066_01709877_01712786 NA coding upstream 76517 1709659 ~ 1713079 (+)
CI01000066_01640177_01643928 NA coding upstream 143798 1640177 ~ 1645798 (+)
CI01000066_01793494_01798848 NA coding downstream 1835 1793199 ~ 1799418 (+)
CI01000066_01800741_01821480 NA coding downstream 8388 1799752 ~ 1821625 (+)
CI01000066_01829752_01832316 ATP6V1E1.L, ATP6V1E1, ATP6V1E1B coding downstream 38352 1829716 ~ 1832316 (+)
CI01000066_01834401_01839641 CECR1B coding downstream 43037 1834401 ~ 1839760 (+)
CI01000066_01950657_01957668 TMEM209 coding downstream 159293 1950657 ~ 1958370 (+)
G270931 NA non-coding upstream 62153 1725603 ~ 1727443 (+)
G270901 NA non-coding upstream 90964 1690130 ~ 1698632 (+)
G270902 NA non-coding upstream 102398 1673414 ~ 1687198 (+)
G270720 NA non-coding upstream 381585 1404775 ~ 1408011 (+)
G270877 NA non-coding upstream 389812 1399573 ~ 1399784 (+)
G270972 NA non-coding downstream 50322 1841686 ~ 1848013 (+)
G271015 NA non-coding downstream 128097 1919461 ~ 1919727 (+)
G270978 NA non-coding downstream 142250 1933614 ~ 1936072 (+)
G271022 NA non-coding downstream 160190 1951554 ~ 1951762 (+)
G271023 NA non-coding downstream 212539 2003903 ~ 2005931 (+)
G270546 NA other upstream 1602919 184528 ~ 186677 (+)
CI01000066_00019553_00029834 PAHX, PHYH other upstream 1769323 19447 ~ 30531 (+)
G270973 NA other downstream 53088 1844452 ~ 1847752 (+)
CI01000066_02274624_02277624 NA other downstream 477805 2274557 ~ 2278119 (+)
CI01000066_02296138_02305439 CMAH other downstream 510846 2296071 ~ 2305637 (+)
G271105 NA other downstream 639346 2430710 ~ 2439169 (+)

Expression


Co-expression Network