G270978


Basic Information

Item Value
gene id G270978
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 1933614 ~ 1936072 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU307533
CACAGTTCTGATGAATGCACTCAGCTCCTACCTGTTGCACAGAGGGCGATGAAGGTTTGCGTGTGTTTGCGGATCAGCGCCTGTCTGTCTTCAGGGAAGGGCAGTTTGTGCAGGATGTGTTCGATAAAGTCAAGAGGGGTGATGGCAGCCAGGTTCCATTTTAATTTACTTAGAACCACCAACTCCCACTCCAGCAGTTGTTGAGATGTAATAGAGTTGTCTGTGTACATGCAGAGCTTCCTGGCCGACAGCGGCTGGCATGCTTTTAATTTTGAAGCCAGGAAGAGACAGACGGCCCCTAAAAGCTGCAAGAAACATTTTCTTGTAGGAACTGCAGCTAAAAATCTGTCCAGGTAGTTCATAGCCAAGGGAAAGACATCCTCTTCACATTTCTCCTCTTCACAAACCTACAGAGACACGGACAGAATTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU307533 True 431 lncRNA 0.47 2 1933614 1936072

Neighbor

gene id symbol gene type direction distance location
CI01000066_01834401_01839641 CECR1B coding upstream 93854 1834401 ~ 1839760 (+)
CI01000066_01829752_01832316 ATP6V1E1.L, ATP6V1E1, ATP6V1E1B coding upstream 101298 1829716 ~ 1832316 (+)
CI01000066_01800741_01821480 NA coding upstream 111989 1799752 ~ 1821625 (+)
CI01000066_01793494_01798848 NA coding upstream 134196 1793199 ~ 1799418 (+)
CI01000066_01784212_01786444 GCP, OSGEP, OSGEP.L coding upstream 147108 1783627 ~ 1786506 (+)
CI01000066_01950657_01957668 TMEM209 coding downstream 14585 1950657 ~ 1958370 (+)
CI01000066_01959189_01959479 NA coding downstream 22561 1958633 ~ 1960399 (+)
CI01000066_01966833_01995697 AHCYL2.S, MGC79134, AHCYL2 coding downstream 30066 1966138 ~ 1995715 (+)
CI01000066_02011151_02031083 STRIP2 coding downstream 75079 2011151 ~ 2031118 (+)
CI01000066_02055967_02056270 NA coding downstream 119895 2055967 ~ 2056333 (+)
G271015 NA non-coding upstream 13887 1919461 ~ 1919727 (+)
G270972 NA non-coding upstream 85601 1841686 ~ 1848013 (+)
G270923 NA non-coding upstream 142250 1789596 ~ 1791364 (+)
G270931 NA non-coding upstream 206171 1725603 ~ 1727443 (+)
G270901 NA non-coding upstream 234982 1690130 ~ 1698632 (+)
G271022 NA non-coding downstream 15482 1951554 ~ 1951762 (+)
G271023 NA non-coding downstream 67831 2003903 ~ 2005931 (+)
G270996 NA non-coding downstream 126617 2062689 ~ 2066286 (+)
G271050 NA non-coding downstream 171919 2107991 ~ 2108242 (+)
G271051 NA non-coding downstream 172239 2108311 ~ 2108637 (+)
G270973 NA other upstream 85862 1844452 ~ 1847752 (+)
G270546 NA other upstream 1746937 184528 ~ 186677 (+)
CI01000066_00019553_00029834 PAHX, PHYH other upstream 1913341 19447 ~ 30531 (+)
CI01000066_02274624_02277624 NA other downstream 333097 2274557 ~ 2278119 (+)
CI01000066_02296138_02305439 CMAH other downstream 366138 2296071 ~ 2305637 (+)
G271105 NA other downstream 494638 2430710 ~ 2439169 (+)
CI01000066_03211701_03215444 NA other downstream 1276932 3211701 ~ 3215446 (+)

Expression


Co-expression Network