Gene
RNA
| Item | Value |
|---|---|
| gene id | G270996 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000066 |
| NCBI id | null |
| chromosome length | 3719324 |
| location | 2062689 ~ 2066286 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU307561 | True | 2255 | lncRNA | 0.38 | 3 | 2062689 | 2066286 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000066_02055967_02056270 | NA | coding | upstream | 6356 | 2055967 ~ 2056333 (+) |
| CI01000066_02011151_02031083 | STRIP2 | coding | upstream | 31571 | 2011151 ~ 2031118 (+) |
| CI01000066_01966833_01995697 | AHCYL2.S, MGC79134, AHCYL2 | coding | upstream | 66974 | 1966138 ~ 1995715 (+) |
| CI01000066_01959189_01959479 | NA | coding | upstream | 102290 | 1958633 ~ 1960399 (+) |
| CI01000066_01950657_01957668 | TMEM209 | coding | upstream | 104319 | 1950657 ~ 1958370 (+) |
| CI01000066_02124655_02126692 | YEATS4 | coding | downstream | 58369 | 2124655 ~ 2126863 (+) |
| CI01000066_02144721_02147772 | FRS2A, FRS2 | coding | downstream | 78435 | 2144721 ~ 2149180 (+) |
| CI01000066_02274624_02277624 | NA | coding | downstream | 208271 | 2274557 ~ 2278119 (+) |
| CI01000066_02287451_02287819 | NA | coding | downstream | 221058 | 2287344 ~ 2288534 (+) |
| CI01000066_02296138_02305439 | CMAH | coding | downstream | 229785 | 2296071 ~ 2305637 (+) |
| G271023 | NA | non-coding | upstream | 56758 | 2003903 ~ 2005931 (+) |
| G271022 | NA | non-coding | upstream | 110927 | 1951554 ~ 1951762 (+) |
| G270978 | NA | non-coding | upstream | 126617 | 1933614 ~ 1936072 (+) |
| G271015 | NA | non-coding | upstream | 142962 | 1919461 ~ 1919727 (+) |
| G270972 | NA | non-coding | upstream | 214676 | 1841686 ~ 1848013 (+) |
| G271050 | NA | non-coding | downstream | 41705 | 2107991 ~ 2108242 (+) |
| G271051 | NA | non-coding | downstream | 42025 | 2108311 ~ 2108637 (+) |
| G270982 | NA | non-coding | downstream | 54002 | 2120288 ~ 2123706 (+) |
| G270985 | NA | non-coding | downstream | 84010 | 2150296 ~ 2160456 (+) |
| G271054 | NA | non-coding | downstream | 96289 | 2162575 ~ 2162800 (+) |
| G270973 | NA | other | upstream | 214937 | 1844452 ~ 1847752 (+) |
| G270546 | NA | other | upstream | 1876012 | 184528 ~ 186677 (+) |
| CI01000066_00019553_00029834 | PAHX, PHYH | other | upstream | 2042416 | 19447 ~ 30531 (+) |
| G271105 | NA | other | downstream | 364424 | 2430710 ~ 2439169 (+) |
| CI01000066_03211701_03215444 | NA | other | downstream | 1146718 | 3211701 ~ 3215446 (+) |
| CI01000066_03354136_03429399 | GRM8A, GRM6, GRM8, GRM8B | other | downstream | 1280507 | 3353662 ~ 3429516 (+) |
