Gene
RNA
| Item | Value |
|---|---|
| gene id | G272304 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000066 |
| NCBI id | null |
| chromosome length | 3719324 |
| location | 2252275 ~ 2252552 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU309008 | True | 278 | lncRNA | 0.48 | 1 | 2252275 | 2252552 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000066_02197683_02248608 | KCNC2 | coding | downstream | 1112 | 2197683 ~ 2251163 (-) |
| CI01000066_02117493_02123683 | NA | coding | downstream | 128592 | 2116807 ~ 2123683 (-) |
| CI01000066_02074798_02093516 | FAR1, FAR2 | coding | downstream | 158759 | 2074798 ~ 2093516 (-) |
| CI01000066_02057126_02059813 | NA | coding | downstream | 192462 | 2057081 ~ 2059813 (-) |
| CI01000066_01926730_01937406 | CCND2B | coding | downstream | 314316 | 1926707 ~ 1937959 (-) |
| CI01000066_02256946_02264417 | CCDC107 | coding | upstream | 4042 | 2256594 ~ 2265481 (-) |
| CI01000066_02325374_02330855 | KRR1 | coding | upstream | 72446 | 2324998 ~ 2330855 (-) |
| CI01000066_02388814_02390434 | PHLDA1 | coding | upstream | 136068 | 2388620 ~ 2390434 (-) |
| CI01000066_02395532_02401122 | NAP1L1 | coding | upstream | 142744 | 2395296 ~ 2401122 (-) |
| CI01000066_02438884_02448563 | NA | coding | upstream | 186282 | 2438834 ~ 2448839 (-) |
| G272067 | NA | non-coding | downstream | 11010 | 2238182 ~ 2241265 (-) |
| G272294 | NA | non-coding | downstream | 74916 | 2177128 ~ 2177359 (-) |
| G272293 | NA | non-coding | downstream | 75341 | 2176713 ~ 2176934 (-) |
| G272291 | NA | non-coding | downstream | 81017 | 2171030 ~ 2171258 (-) |
| G272310 | NA | non-coding | upstream | 16266 | 2268818 ~ 2269061 (-) |
| G272060 | NA | non-coding | upstream | 32766 | 2285318 ~ 2286986 (-) |
| G272039 | NA | non-coding | upstream | 65376 | 2317928 ~ 2318427 (-) |
| G272317 | NA | non-coding | upstream | 81626 | 2334178 ~ 2334388 (-) |
| G272021 | NA | non-coding | upstream | 271950 | 2524502 ~ 2526631 (-) |
| G272221 | NA | other | downstream | 267047 | 1959102 ~ 1985228 (-) |
| CI01000066_01843043_01848783 | NA | other | downstream | 403416 | 1842554 ~ 1849466 (-) |
| CI01000066_01823227_01826380 | NA | other | downstream | 427572 | 1823029 ~ 1826817 (-) |
