G271111


Basic Information

Item Value
gene id G271111
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2285313 ~ 2286834 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU307688
TTTATGCCAAAAAGGTTCTATATAAGGAGAAATGTCTTTAATGAATGAATAATACTTGTGTTTAACAGGTTATTTCAATTTTTTCTAGTGAGAAAATATGTCTATGAGCAGTTTAATTCATAAAATTGAATCAAAGCAAAATCAATTAAAACCAACAGCACCTGACGAAACCCTTGAAGGTTTCATTGAGAACCTTTTCTTCTAAGAGTGTATGATGGTTTTAAGGTATGAAGGTTATATATATAATATAGTTGGAGTTTAACTAACTTTAGTACTCCCATTTAGGGATGCACGATATATCAGCCACCATATCGGTATCGGCCGATATATGTTCATTTTTAATGTTGTCATTATCGGCCTGATAAGAAAATTTGGCTGATATATTAAAGCCGATAAATAATGGCTTATTTCCTTCAGCTGAGACACTTCAGATGTGCACTGTTTGCCTTGATGGGTTTGAATTGCTTGAAATATGATTAGAATCACTTCAAAAATGAAAATAAATTTAAGTGCAACATGTGCAGCACAAGTCTGTCATATAGGCTACATAACATTATAATGAGAACATTATAATTGTGTGCTTTGGACATGGCTTTTAATAGTGAGATGTGTTCATTTTTAATGTTATTGTTATCGGCCTGAAAAGAAAATTTGGCCGATATATTAAAGCCGATAAATAATGGCTTATTTCCTTCAGCCGAGACTCTCAAAAATTATATAAAAATTTGGATTTAGATTTATCAGCCAATTTATCATTTATCTGCTTTCAAATATAAAAAATTATCAGTTATCGGTATTGGCCAAAATTTTCATATTGGTGCATACCTACTTCCATTTAAACTTATTTAATTTCTAATTTTCATTTTTCAATTCAAGTTTTTTAAGTTTTTCATCTGACATTTATATTTTATTTCAGCTTTATTTTAATTAATGAAAACAAAGTTTTTCAGTTTTAATGGTAACACTACAGTAAGGTTTTATTTGTTAACATGAACTGAGAATGAACTAAGCATTTGTTTTTCACTGGCAGGTTCTGGAATCATTTTCAGACGGAACTGCCACTATCAGCACCAGACTGGGATCATTTCCTTCAAACTGCCAGAGAAACAGACGTGACAGTTGAGAGCAGTAACAGCTGTGTGCTGTCTTAATGCACACACATGTTGGTACACTTATCATTATGAGGATAGACGTAATGGTTTATGGGTTTATGGGTCCCACTTTATATTAGGTGTCTTTAACTACTATGTACCAACATTTAAATTAATCATTTAATACAATGCACTTACTGTGTACATACATATGCACTTATATTTTTAAAGATACCTGCATGCAATTACAGCTGTAATAAATTTCTGTAATTATGTCTAAAATTGTTTAGTATGTTTGTCTAGTGTTTTTAATTACAAGGATATCAGGGTGTAGGGGGCCTGTAGGGGGCCTGAAACCTTAATACATACATCTAAGGAAGGTCTTTAATGTAGGTTATCAGTGTCATTGTCTTGGTCATGTGGTTTTGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307688 True 1522 lncRNA 0.32 1 2285313 2286834

Neighbor

gene id symbol gene type direction distance location
CI01000066_02274624_02277624 NA coding upstream 7194 2274557 ~ 2278119 (+)
CI01000066_02144721_02147772 FRS2A, FRS2 coding upstream 136133 2144721 ~ 2149180 (+)
CI01000066_02124655_02126692 YEATS4 coding upstream 158450 2124655 ~ 2126863 (+)
CI01000066_02055967_02056270 NA coding upstream 228980 2055967 ~ 2056333 (+)
CI01000066_02011151_02031083 STRIP2 coding upstream 254195 2011151 ~ 2031118 (+)
CI01000066_02287451_02287819 NA coding downstream 510 2287344 ~ 2288534 (+)
CI01000066_02296138_02305439 CMAH coding downstream 9237 2296071 ~ 2305637 (+)
CI01000066_02320093_02321778 NA coding downstream 33259 2320093 ~ 2322043 (+)
CI01000066_02330898_02340303 NA coding downstream 44064 2330898 ~ 2341338 (+)
CI01000066_02456114_02457813 NA coding downstream 168462 2455296 ~ 2458517 (+)
G271074 NA non-coding upstream 28055 2256779 ~ 2257258 (+)
G271085 NA non-coding upstream 32463 2252642 ~ 2252850 (+)
G271068 NA non-coding upstream 99684 2185386 ~ 2185629 (+)
G271063 NA non-coding upstream 107097 2178011 ~ 2178216 (+)
G271058 NA non-coding upstream 114032 2170963 ~ 2171281 (+)
G271090 NA non-coding downstream 5172 2292006 ~ 2309532 (+)
G271124 NA non-coding downstream 16000 2302834 ~ 2313213 (+)
G271129 NA non-coding downstream 28169 2315003 ~ 2315625 (+)
G271104 NA non-coding downstream 31103 2317937 ~ 2318240 (+)
G271143 NA non-coding downstream 47343 2334177 ~ 2334388 (+)
G270973 NA other upstream 437561 1844452 ~ 1847752 (+)
G270546 NA other upstream 2098636 184528 ~ 186677 (+)
CI01000066_00019553_00029834 PAHX, PHYH other upstream 2265040 19447 ~ 30531 (+)
G271105 NA other downstream 143876 2430710 ~ 2439169 (+)
CI01000066_03211701_03215444 NA other downstream 926170 3211701 ~ 3215446 (+)
CI01000066_03354136_03429399 GRM8A, GRM6, GRM8, GRM8B other downstream 1059959 3353662 ~ 3429516 (+)

Expression


Co-expression Network