Gene
RNA
| Item | Value |
|---|---|
| gene id | G271090 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000066 |
| NCBI id | null |
| chromosome length | 3719324 |
| location | 2292006 ~ 2309532 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU307664 | True | 1468 | lncRNA | 0.41 | 2 | 2292006 | 2309532 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000066_02287451_02287819 | NA | coding | upstream | 3472 | 2287344 ~ 2288534 (+) |
| CI01000066_02274624_02277624 | NA | coding | upstream | 13887 | 2274557 ~ 2278119 (+) |
| CI01000066_02144721_02147772 | FRS2A, FRS2 | coding | upstream | 142826 | 2144721 ~ 2149180 (+) |
| CI01000066_02124655_02126692 | YEATS4 | coding | upstream | 165143 | 2124655 ~ 2126863 (+) |
| CI01000066_02055967_02056270 | NA | coding | upstream | 235673 | 2055967 ~ 2056333 (+) |
| CI01000066_02320093_02321778 | NA | coding | downstream | 10561 | 2320093 ~ 2322043 (+) |
| CI01000066_02330898_02340303 | NA | coding | downstream | 21366 | 2330898 ~ 2341338 (+) |
| CI01000066_02456114_02457813 | NA | coding | downstream | 145764 | 2455296 ~ 2458517 (+) |
| CI01000066_02503549_02509560 | NA | coding | downstream | 192556 | 2502088 ~ 2510262 (+) |
| CI01000066_02511030_02521229 | ZDHHC17 | coding | downstream | 201422 | 2510954 ~ 2521490 (+) |
| G271111 | NA | non-coding | upstream | 5172 | 2285313 ~ 2286834 (+) |
| G271074 | NA | non-coding | upstream | 34748 | 2256779 ~ 2257258 (+) |
| G271085 | NA | non-coding | upstream | 39156 | 2252642 ~ 2252850 (+) |
| G271068 | NA | non-coding | upstream | 106377 | 2185386 ~ 2185629 (+) |
| G271063 | NA | non-coding | upstream | 113790 | 2178011 ~ 2178216 (+) |
| G271129 | NA | non-coding | downstream | 5471 | 2315003 ~ 2315625 (+) |
| G271104 | NA | non-coding | downstream | 8405 | 2317937 ~ 2318240 (+) |
| G271143 | NA | non-coding | downstream | 24645 | 2334177 ~ 2334388 (+) |
| G271086 | NA | non-coding | downstream | 25064 | 2334596 ~ 2393844 (+) |
| G271206 | NA | non-coding | downstream | 231178 | 2540710 ~ 2540943 (+) |
| G270973 | NA | other | upstream | 444254 | 1844452 ~ 1847752 (+) |
| G270546 | NA | other | upstream | 2105329 | 184528 ~ 186677 (+) |
| CI01000066_00019553_00029834 | PAHX, PHYH | other | upstream | 2271733 | 19447 ~ 30531 (+) |
| G271105 | NA | other | downstream | 121178 | 2430710 ~ 2439169 (+) |
| CI01000066_03211701_03215444 | NA | other | downstream | 903472 | 3211701 ~ 3215446 (+) |
| CI01000066_03354136_03429399 | GRM8A, GRM6, GRM8, GRM8B | other | downstream | 1037261 | 3353662 ~ 3429516 (+) |
