XLOC_010456 (ccr8.1)


Basic Information

Item Value
gene id XLOC_010456
gene name ccr8.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 9421002 ~ 9425451 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020536
ATGAGTTCTACAGTTGCCCTGCTGAGCATTGCCGCACAACTACTTTTGACTGACATGGAAGACAGCAGCATCCCTGATCTGAATGATCATACACTTTACATATCAAATGTGAATGAGCCAGTTACTGATCAGCCAACTACCCCTGTTCTTATGATTACAGACTACAGTTATGATGATTACTACAACTCTGTTGATCCTGATTCATTACCCTGTGTTTATCCAACGCATGGAGCTAGCATCCTCCCAGTGTTATACTCCCTGTTTTTTGTAGTGGGCTTTCTGGGTAACACATTAGTTATCAGGTTGGTTTTGAAGAGCCTGAGAAGCATGACTGATATCTGTCTCCTGAACCTGGCTATAGCTGACCTGCTCTTGGTCTCCTCGCTTCCCTTTTTGGCGCACTATGCCGGAGACCAGTGGATCTTTGGAGGTTCTATGTGCACTATGGTGCTCAGTGTCTACCACATAGGATTCTACAGTGGGATTTTCTTCATAGTACTGATGAGCGTTGATCAATACTTGGCTGTAGTTCATGCTGTGTTTGCATTGAAGGTCAGAACAAGGACATACGGGTTCATAGCTAGTTTAGTCATGTGGGTCGCTGCTGTCGCTGCATCATTTCCTGAGTTGATATACATCGACACCACagatataaataatcaaactctttGTACATCCTATCCAACGACTGATCAATCCTCTTATCATGATTCAAAGACAAATggaatctttaaaatgaacatcaTAGGTTTAATTATTCCACTTTCTGTGATAGGATTTTGTTACTCGATGATTCTCATCAAACTTCTAAACGTTCGATCATCCGGGAAGAAGGCTGTTCGTCTTGTCGTGGTGGTGATGGTGGTCTTCTTCTGCTGCTGGGTTCCGTACAATATTGCAGCTTTTTTTAAAGCCTTGGAGCTGAAAAGAGTCATACCTCATTCCTGTGAAAGTAGTAAGGCGATCACTTTAAGTCTGCAGATCACAGAAGCTGTGGCGTACTCACACAGCTGTATTAATCCATTTCTCTACGTGTTAGTGGGAGAGAAATTTAGGAAGCATCTTTTCAGACTTCTGAACAGGACACCATTCAGCAGACTGCAGTTCATGAAAAGTTATGTACAGACCACAGCATCTGTTTATTCACAGACTACTAGCTTGGATGCAAGATCCTCTGCCTCAGTCTGAATTTAAgaattatcagaaaaaaaatcactgaacCACCCACTAACCTTATATAGCTTTAAACTACTTCATGTTTAATTTActcatttcatttttatacaATTATGCAAGATATTTTCGTACACTTATGGACATTTTTATagcacaataaatgcactatataaataaatatatataactattttgatgaaaaaaagtATTCCCACGATTGGTTCTGCATGCATGAAGCATAATACCATTTTATTATAGGTTTTAATATGAACAGTGTAGCTTTTAGTTGAaatcagaagtttacacacactgtatgaaaaggcacataaccatttaaaaaaaagtctgatgttaatgtgactaaacaagtaagttaggattatcaaatttgtttctgttatgcttaatagcagaatgagagatattttttgagaaattgttataacttttcttgaaagtcaaatttacatacaataagattatttagcctctgaaaaagctcagataatggtgtcaaggttttggaagttcctgattggctaattgacaacatttgagttaattggagcaacaactgtagaatagtatttaagggaaaacctcaaacacactgcttactTGTGAAACAACATGGaggaatcaacaaaaaagccagattaccatttgctaaattacactggaaaaaaaatatacacacatttttggagacatgtcctgtggtctgatggaactaagatcgAAATGTttgaccataatgaccagtgttacatttggaggaaaagggtaaagcttacaagcctaagaacaccatcccaactgtgaagtatgaggGTGACAGGAGCATGTTGTggtgctgttttgctgcaggagggactggtccacttcataGCAtaaatggcatcatgaagaaagaacattatgtagaaatactgaagcaacatctcaagacatcagccaggaaattaaaacttggccacaaatgagtcttacaaacagaccatgaccctaagcatactgtaAAACTAGTCAACTAgttgtgctttaaggacaacagtgtgaatgttttagagtggccatcacaaagccctgatttcAATCCTATAGAAGATTTGTGGGTTAAAAAAAGCCTGTGTGAGCAAGACAGTCTATAAatcttctataggattgagatcagggctttgtgatggcctggcagacagcctacaaatctgacttacaccaattctgtcagaaggaatgggccaaaattctaTTGTGAAAAGCTTTGAGTTTCTCTTTATGTTCTTGCTCTAGGTATACAGTAATGGTTACTTTGTATGTAAATGATTGCTTTATTAACACAACTTgtaacctaatctaaagtgaggactatttgtgctttgtaaatcccttataaatgacaattaaagacaGTTATATTA
>TCONS_00020537
ATGGCCAAGGGCAATTATTGTAATGTACTGATTGTAGTAACAACAGGTAAAAAATTAATAGTCAGTTTTGTCTCTGTCATTAACAGCATTGCCGCACAACTACTTTTGACTGACATGGAAGACAGCAGCATCCCTGATCTGAATGATCATACACTTTACATATCAAATGTGAATGAGCCAGTTACTGATCAGCCAACTACCCCTGTTCTTATGATTACAGACTACAGTTATGATGATTACTACAACTCTGTTGATCCTGATTCATTACCCTGTGTTTATCCAACGCATGGAGCTAGCATCCTCCCAGTGTTATACTCCCTGTTTTTTGTAGTGGGCTTTCTGGGTAACACATTAGTTATCAGGTTGGTTTTGAAGAGCCTGAGAAGCATGACTGATATCTGTCTCCTGAACCTGGCTATAGCTGACCTGCTCTTGGTCTCCTCGCTTCCCTTTTTGGCGCACTATGCCGGAGACCAGTGGATCTTTGGAGGTTCTATGTGCACTATGGTGCTCAGTGTCTACCACATAGGATTCTACAGTGGGATTTTCTTCATAGTACTGATGAGCGTTGATCAATACTTGGCTGTAGTTCATGCTGTGTTTGCATTGAAGGTCAGAACAAGGACATACGGGTTCATAGCTAGTTTAGTCATGTGGGTCGCTGCTGTCGCTGCATCATTTCCTGAGTTGATATACATCGACACCACagatataaataatcaaactctttGTACATCCTATCCAACGACTGATCAATCCTCTTATCATGATTCAAAGACAAATggaatctttaaaatgaacatcaTAGGTTTAATTATTCCACTTTCTGTGATAGGATTTTGTTACTCGATGATTCTCATCAAACTTCTAAACGTTCGATCATCCGGGAAGAAGGCTGTTCGTCTTGTCGTGGTGGTGATGGTGGTCTTCTTCTGCTGCTGGGTTCCGTACAATATTGCAGCTTTTTTTAAAGCCTTGGAGCTGAAAAGAGTCATACCTCATTCCTGTGAAAGTAGTAAGGCGATCACTTTAAGTCTGCAGATCACAGAAGCTGTGGCGTACTCACACAGCTGTATTAATCCATTTCTCTACGTGTTAGTGGGAGAGAAATTTAGGAAGCATCTTTTCAGACTTCTGAACAGGACACCATTCAGCAGACTGCAGTTCATGAAAAGTTATGTACAGACCACAGCATCTGTTTATTCACAGACTACTAGCTTGGATGCAAGATCCTCTGCCTCAGTCTGA

Function

symbol description
ccr8.1 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to several human genes including CCR8 (C-C motif chemokine receptor 8).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006935 chemotaxis biological_process
GO:0006955 immune response biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0007165 signal transduction biological_process
GO:0060326 cell chemotaxis biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016493 C-C chemokine receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004950 chemokine receptor activity molecular_function
GO:0019956 chemokine binding molecular_function
GO:0019957 C-C chemokine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070302-1 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to several human genes including CCR8 (C-C motif chemokine receptor 8).

Ensembl:

ensembl_id ENSDARG00000095789

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020536 False 2597 mRNA 0.38 3 9421002 9425451
TCONS_00020537 True 1248 mRNA 0.42 2 9422411 9423735

Neighbor

gene id symbol gene type direction distance location
XLOC_010454 adcy2a coding downstream 37373 9275689 ~ 9383629 (-)
XLOC_010455 CR394537.1 coding downstream 118808 9302079 ~ 9302194 (-)
XLOC_010453 triob coding downstream 493577 8751815 ~ 8927425 (-)
XLOC_010452 NA coding downstream 741540 8668981 ~ 8679462 (-)
XLOC_010451 cobl coding downstream 757450 8529772 ~ 8663552 (-)
XLOC_010457 prpf3 coding upstream 8287 9433738 ~ 9453591 (-)
XLOC_010458 FO704756.1 coding upstream 139052 9564503 ~ 9566371 (-)
XLOC_010459 mal2 coding upstream 246675 9672126 ~ 9675982 (-)
XLOC_010460 COLEC10 coding upstream 255457 9680908 ~ 9694822 (-)
XLOC_010461 NA coding upstream 333725 9759176 ~ 9761753 (-)
XLOC_010626 CR392024.2 misc upstream 11469661 20895112 ~ 20895175 (-)
XLOC_010450 CU062417.1 non-coding downstream 941993 8478880 ~ 8479009 (-)
XLOC_010447 CR478208.1 non-coding downstream 1132555 8287771 ~ 8288447 (-)
XLOC_010444 NA non-coding downstream 1278690 8140712 ~ 8142312 (-)
XLOC_010466 NA non-coding upstream 587534 10012985 ~ 10013605 (-)
XLOC_010472 NA non-coding upstream 995719 10421170 ~ 10429893 (-)
XLOC_010473 NA non-coding upstream 1000296 10425747 ~ 10428540 (-)

Expression


Co-expression Network