Item | Value |
---|---|
gene id | G272472 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000066 |
NCBI id | null |
chromosome length | 3719324 |
location | 3243268 ~ 3314289 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU309232 | True | 1000 | lncRNA | 0.53 | 2 | 3243268 | 3314289 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000066_03203296_03203476 | NA | coding | downstream | 39792 | 3203123 ~ 3203476 (-) |
CI01000066_03158972_03165320 | PIK3CG | coding | downstream | 77948 | 3158316 ~ 3165320 (-) |
CI01000066_03044933_03045997 | NA | coding | downstream | 197271 | 3044336 ~ 3045997 (-) |
CI01000066_02891474_02931062 | PLEKHA5 | coding | downstream | 312206 | 2890829 ~ 2931062 (-) |
CI01000066_02874325_02887004 | AEBP2 | coding | downstream | 355935 | 2874061 ~ 2887333 (-) |
CI01000066_03439936_03446824 | NA | coding | upstream | 125390 | 3439679 ~ 3448858 (-) |
CI01000066_03454386_03455995 | NA | coding | upstream | 140041 | 3454330 ~ 3456166 (-) |
CI01000066_03649007_03654018 | LMOD2 | coding | upstream | 334643 | 3648932 ~ 3654018 (-) |
CI01000066_03655461_03659325 | ASB15B | coding | upstream | 340543 | 3654832 ~ 3659717 (-) |
CI01000066_03711890_03717941 | PMPCB.L, PMPCB | coding | upstream | 397160 | 3711449 ~ 3717941 (-) |
G272462 | NA | non-coding | downstream | 27194 | 3214796 ~ 3216074 (-) |
G272431 | NA | non-coding | downstream | 122362 | 3120464 ~ 3120906 (-) |
G272428 | NA | non-coding | downstream | 129271 | 3113755 ~ 3113997 (-) |
G272417 | NA | non-coding | downstream | 157665 | 3085215 ~ 3085603 (-) |
G272412 | NA | non-coding | downstream | 165312 | 3077560 ~ 3077956 (-) |
G272559 | NA | non-coding | upstream | 153604 | 3467893 ~ 3567133 (-) |
G272561 | NA | non-coding | upstream | 267491 | 3581780 ~ 3582119 (-) |
G272613 | NA | non-coding | upstream | 273267 | 3587556 ~ 3587801 (-) |
G272614 | NA | non-coding | upstream | 274039 | 3588328 ~ 3588529 (-) |
G272221 | NA | other | downstream | 1258040 | 1959102 ~ 1985228 (-) |
CI01000066_01843043_01848783 | NA | other | downstream | 1394409 | 1842554 ~ 1849466 (-) |
CI01000066_01823227_01826380 | NA | other | downstream | 1418565 | 1823029 ~ 1826817 (-) |