G272559


Basic Information

Item Value
gene id G272559
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 3467893 ~ 3567133 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU309327
GGTGATTTAACTATCCAAATCTGAAGACATGACAGGCTCAAAAAGCATCTTAAACACAGATGTTTGTATCACTAAGCAACTGGGTGGGTAATTTGAGTGGAACAGATTTTGCAGCAATCTAAAGCGCCACCTGGTGGTGTAAAACAGTAATGCATAAACATAACAAATGCAGTGTAAGAACTCAAAAAACAGAAAGACACATATTCCCCCTAAAACACACTTACAGAGCCACAGGTGTACTGCATGTCTAACACAATGTGAATCTACTTAAACAGAATAAGGGTTACCAAAGTGCGAGAATGAAGCTCGAATCACATAGAGAGTGTATTACTGTGATCAATCACCTGCTGTCCACATGAGCGTGAGATGATGAATGACTCGTATATCTCTGAACAAGCAGCAGCAATATCTCACTGCTAGATGCACAATATCACAGATATGGGCTGGCATTAATCAGTCAATCAATCAACCAGGCACAGTTTACTACAAAACGAAGATCTTTCATCATTTACTCTCTCTCATGCCATTCCAAACCGGAACGACTTTTTCCTTCTTCGGAACGCAGAAGTTTAGCAAAATGTCCAGGCTTCTATTTTCTATATTTTAAAAGACTGATGGTGAAACACAAATCATTTCTGGATGAAATAAGTTCAGAAACTGCATCATAGAGAAAGACAGCACAATAAACCTGATGTCACATGACCACTCATACTAGGTCACTAGAGGTCTGAGTAAAAGCCATTCAATTCTCTGCACAATAGGACAGAAACAGCGTATCACTTAGAGAAGTGGCGTGATGACAGCAGTTAGTGGTGAGTGCAGCTTCGAGCGAATGGAAGAGGACTGTCGGTAATGGCCTCTCGGATTGCTCTGGATGACTCAGAAAATACATCTCAGAGACTGTTCAGGATTTGACCGATGAGATTTGAGTTTCATTTTTTGCCATTCAATGGCTAATTTTAATCAAATAGGTGCAGAACTTGTATTTCGAAGCTACAACGCCATATTCGACACATCTATACTTATATTCAGCTGACTGAGGTGAATTCCTTCAAGTCTCGCGCGTCTGTTGCCAGAGCGCGCACGTCGTCAGCGTCAGTCTTGCGACAACACGAGGCCTGCTGCATGAAGCCGGTTTCAGTTTGCTAATCAGATTGCTCTCAGCAGTGGGCGGGACTTACAAGCAGTAATCCAATTGGCTGAAAATGTGATTAATATCCGAAAGCCTGTTGCCAATTTGCAATCCACCTGAGGACCAGCGTGAGCACAAGGAGAAGTCTTCTTTGAGTTTTATGATCTCTGGGTCAGAGCTGCTGGAGGTCATGAGGAGGTGGCAGGAGAAGCAGCCACAGCAGTCTCTTATTCCACTGACCTTTTTTCTGGAGTCAGTGGAGCGCACTCAGTTCGCTGCCATAATGTTCCTTTGACAAGAACTCTTGGACGTGTCTGATAATGGACCAGCTCATACCCGTTCTCTGGGATTAAAGGTTACAACAGGTCATTTCTGTTTGAGTGCATGTTTGAAAATGGAGTTATTTACAAACAGTTTGTGTGCACAATAAAAGGCTACATGTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU309327 True 1576 lncRNA 0.43 4 3467893 3567133

Neighbor

gene id symbol gene type direction distance location
CI01000066_03454386_03455995 NA coding downstream 11727 3454330 ~ 3456166 (-)
CI01000066_03439936_03446824 NA coding downstream 19035 3439679 ~ 3448858 (-)
CI01000066_03203296_03203476 NA coding downstream 264417 3203123 ~ 3203476 (-)
CI01000066_03158972_03165320 PIK3CG coding downstream 302573 3158316 ~ 3165320 (-)
CI01000066_03044933_03045997 NA coding downstream 421896 3044336 ~ 3045997 (-)
CI01000066_03649007_03654018 LMOD2 coding upstream 81799 3648932 ~ 3654018 (-)
CI01000066_03655461_03659325 ASB15B coding upstream 87699 3654832 ~ 3659717 (-)
CI01000066_03711890_03717941 PMPCB.L, PMPCB coding upstream 144316 3711449 ~ 3717941 (-)
G272472 NA non-coding downstream 153604 3243268 ~ 3314289 (-)
G272462 NA non-coding downstream 251819 3214796 ~ 3216074 (-)
G272431 NA non-coding downstream 346987 3120464 ~ 3120906 (-)
G272428 NA non-coding downstream 353896 3113755 ~ 3113997 (-)
G272417 NA non-coding downstream 382290 3085215 ~ 3085603 (-)
G272561 NA non-coding upstream 14647 3581780 ~ 3582119 (-)
G272613 NA non-coding upstream 20423 3587556 ~ 3587801 (-)
G272614 NA non-coding upstream 21195 3588328 ~ 3588529 (-)
G272615 NA non-coding upstream 21862 3588995 ~ 3589368 (-)
G272618 NA non-coding upstream 25016 3592149 ~ 3592438 (-)
G272221 NA other downstream 1482665 1959102 ~ 1985228 (-)
CI01000066_01843043_01848783 NA other downstream 1619034 1842554 ~ 1849466 (-)
CI01000066_01823227_01826380 NA other downstream 1643190 1823029 ~ 1826817 (-)

Expression


Co-expression Network