G271479


Basic Information

Item Value
gene id G271479
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 3581408 ~ 3586319 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU308086
TGTAAAAACTTTATAGTGACTTTACATAGATTATTTAACTGCCAAAAATTTTTCAAAAATATTTAACAAATGAATGAAATTCATAGCAAAAAAAAAAAAAAAGACATAAGTGGAAAATACAGGGTTCCCACAACTTTTGACAAATGAATTGCAATTATTTTACAGTAATTTATAATAATTTAAAAAAAAAAATTTTTATCACTATAAATAATTTTTTTTTATTAAGATTTTACTCATTTCCATCATTTCTCCAGGCCTGAAAATCACAGATCTTTCCAGATTTTCCCACAAAAATAACAAACAGCTCATCTGAAGTTCTCCAGTGCAGAAAGTTGACTTGATTTAAAGGGATCTGTCCAGTTTTGACATGTCAAGCTCGTCCGGTGTAGACACGGTGTTCCTGTCGCACGGTGAGTTTCTGCATTTATTGAAAGTAACATTTCTCTAATGTTTGTAAATGGCTGTGTGTTGCGTGCCGTGACCTTTCTCTTGATGAAGGTGATTCTTGTGAATCGTTCTTGAAGTCTGTAGAGCAGATGTGTGGGTAACTCACCCGCCCAGATCTGTATGTGTCTTACACCTGTGAACACCCACACAATGCTCGTTCTAGTTAACGCTTTCTAAACGTTTTTATATAACCAAAACGAAATGTCTCTTTAATAAACAGGAAACGTTTGCTAGAAGAATGGCAAACCGATCAATTAAAATGCCAGTGTGGTTGTGTGCATTTCTTTTGTAGCCTGTGCTGATTCTGAACTGGCTTTTGTGTTTCCAGGAAGATAATGCTGAATACAAACAGAGTGTTTTGCTTGACTAAAGTCTCCAACAAAGATTTGCAATGTGTTTCTAAGCAGTCGCACTCTTTTTCTCGTGCATTATTCAAGGCCAGCAGCACACATCCGTCCCTGCATGCGTCTGAGGAATTGTTTATCCACATTAAAGCATTAGCTGTCAGGCTGCACATTGAACAGGCCCAGATGAGATCTTACTTTTGTATTTCAAATGCATCTGGTGTGTTTGAGGTGTCAGAAACGGAGCAAGCTGCTATTTTTGGGACACTTTGTGGGAAGATAGTGATAGACAGGATCAATTTACATATGAAAATGTTTCACCAGAAATGCCACGGTTTGATTTGTTGTAGCGTAAGTCAGAATATGTTCACCTACTCATGTTATATCTCAATCGTGCATGATTCTGGAAAGCTTTGAACATTTGTAAAGTCTCTCAAAATCATGCATGGGTCACAGTTGGCCCACAAAACAAGATCGAATAATAAATGATTTTGCATAAAAAGTGAGGCCTATTTTAGGACCATTAAGATGTTTTGCATCGTGACATTATTTACATGAGCATTAAGCACATTTTCTCTTCAAATTCTCATTACTGCAAGGTTGTCTTACTTTTCTGTCTTTTTCTTTGTTTTTTATTCTCATTCTCAATAGTGATTTTAATCACTACAGTACAAAATAATGTAATTCAATGATCTTTTTATTTAAATCAGCATAAATTAAAGCTGCTAAATAATTTCTGTGCCACCAGCAGGGTTGCCAGTTTTTTACAACAAAACCCGCCCAATTGCTACTCAAAACTAGCCCAAAACTAGCCCAATCGCATTTCAGGGAGGGGGTCCCCAGTAAAAATTGCGTCCCATGGGGTAAAATCTGCGTTTTTTGGTGGGATTCCCATGGTAAAATTAGCATTCCAGGGGCTAAATATCATGTTGTTAGGGTCGCTTCAACCTGCGGACATGAAAAACAACCCATGACAACACTGTTAAAGTAGCCCAATTCCGCAGGAAAAGCTACACTGGCCATCGGCGTCAACAAATTACAATATTCGACCATCTTCATTGGTCGAACAAACAGATAGTCCCGCCCCAAGCTCACGCCATTGGCTGAGCTAATGTTCAAATGTTAGTCTGATCAAGATACTCAAATAAGCAACTTTTTTTTATTATTGAATTTGATTTGAAATCAACTAATAAATCATTTAAGAATTTTAATTAAGCACAAATGTATATTTTTTTTCTGTGAAAAAATATAGCCTCGTTCAGACTGTCAGTCCAAATCTGATTTTTGTGCATATCCGATTGGATCCGATTTCAAATCATAAAATGTAAATGTCAGACTTTGTTATAGGAAACATGCTGAAAGTAGCTGCAGAAACAAGGTTGTGTTGTTGCAAATGTTCAGCATATTTCCTATAATAACGTCTAAAAAGTATAAACACTTTATTTATTTATATACATTTTTTTTTTTTTTAGAAAGTTACCGATTGTTTCTCTAGATAAGACTCTTATTCCTCATCTGGGATCGTGTAGAGCCCTTTGAAGCCGCACTGAAACTGACATTTGGACCTTCAACCCGTTGAACCCTGAAATGAAAAATCCTGGAATGTTTTCCTCAGAAACCTTAATTTCTTTTTGACTGAAGAAAGAAAGACATGAACATCTTGGATGACATGGGGGTGAGTAAATTATCAGGACATTTTAATTCTGAAGTCAACTATTCCTTTAAGATGCATTTTGGTCAATCAGATCACAAGTGGACAATGCTAAATACAGGTGTAAACGGGATCTAAAACGTTTTGAGCTTGTCCACTTTCAACTACTTCCAGAGTTAGTTGAAAACACATTCGGACCGGATTGCTTTCGTAATGTAAACGCTCATGTGGTTGAATCCACAAAAGACGCCTACTCTCCACCTACTGAACTAACGCGTAAACATTATGGGAAGCGTGCTAGCCAGACGGGATTTAAACTTTGTCAGCTGAAGACCCAATGTTGGTTTGTAGACAAAAAACTTAGCAAACACAATGTTCTCTCACCATTCCTGATTTCTAACACTCATTCACAGTGTTCGGTGTCATCTTGCGGCTCATCAGAGCAGAAACAAAAGCTGCTGCTCACTGTATGTTTTCCCATCATCTCCGGTCACGTTTATATGTAAATTTTGTGAGCTTGTTTCCTCCATTAGATTGAAAGGTCTGAAAAACCCATACATTTACCCACCCATAGACCCTGCCCTCAAAGAAATCAAGACAGAAGTGGTTGAAAGTGGACAAAAGAGACGGATAAAAACACCAAGTATAAACAGAAATGTGTCTCCCTCGTCTACTTGTGATCCAATCAACCAAAACGCATCTTAATACCAGGTGTAAACAGGGCCTGAATGTCCTTTGTTCACAGATTTCTGTCTTCTGGTGCTGTATTGTCACGTTTCGTCCACGGTGGAGATTGATCTGCCATATTTCACTGGTAATTGTCCAGGAACAGCATGACGTCTATCATTACAGTGTCTCTGTCAAACCCCCCTGCCCCGCAGCAGACACTGGCTATTGAATAACCCCATTATCTGAGCCCTGGTCTCCTTTCAGAAGGTCCAATAATGACAGCAGCAGCAAAGCAAGTTATAAGAAAGCGCTACGGCTGTTAAGGTGATGCCGTTTTCTTCCAGGCCTCCTTATGGCTTTATTCCAGCCCTGTCGGAGAGGAACAGGTGTGTTTTGTCTATTTTAATGAGGTTAGTTTTTGAGAAACTGCCAAGAATAACTTTCCCCCAGACCTTGTTAGGTTGCAGTGGATGTCTGCAGTCTTCAGCGTGTTTATGGTAATGTGTTCGGCCGGGGCTGAGAGAACAGCACACTTACTCAAGCGGAAACAGAGCTATTCTTTTCCCATCACTGTCAAGACAGGATGTGCTGTATCTCAAACAGAATCACCGCTATAAAAGCAGAAATTTAGTATTCTGTTTGCGCCAGTCATTTTTCACAGACTATTGTCAATAAGTTATTTAAATGATTGTTTTCATTTACATTTGGCAGAGGCATTCCAGCTGAATGTGTTCAGTATGTTTGTTCCTGGGCATCAAAACGGATGGCCTTGATGTTGCTGGCGCCGTACTCTACCAGTTGAGCTACAGAAAACATGTAAAGTTTAATCAACAGCATCTTAGCATAAACAGACAATAAGTTTGATTTGTTTGTAACAATTAACAAAAAATTGTAATTCACTTTAAATGGCGACGATGCACTGGAATAATCATACATAAAATAAAGAAGACTGGGGAAAAACGGCAAGTATAGCCACAATATTTAAACACTTTATGTGTAACAAGACAGTCACTTACTAACTTTGTTTGTGTAAAGTTATATTATATGATGAAATATGCACTTAAATTGAGTTATACTGCCTAAACAGTTTTATTTTCAGTGTTGTGGTAACACATTACAAGTAACGCGAGTTACTTAATCAGATTACTTTTTTTTCAAGCAACTAGTAAAGTAACGCATTACTATTAAATTTACAATAAAATATCCGAGTTACTTTTTTAAGTAACTAACTCAGATTACTTTGTTTGAGAGGTGCACATCAGGCTACACCGTAGGCTACGCGTGCTGCACACAGCCTACAACATAGCTACGGCGTAGTTTTGACGCAGAAGTATAAATCAGCCTTGAGGCTTATTCATTTCAGTTTAGGTGTGAAAAATCCCTTTACATTTGCCCAAATAGAATTTTTTTTTTAATTAAAATGCAAACAAGCAAGTCCAGTCCAGGTGAGAAAAAGTAACGCAAAAGTAATGTAACACATAAAAAGTAACTAAGTAACACATTTAGTTACTTTTTAGGGAGTAACGCAATATTGTAACACATTTAGTTACTTTTCAGGGAGTAACGCAATATTGTAACACATTTAGTTACTTTTTAGGGAGTAACGCAATATTGTAACACATTTCATTACTTTTTGGCAGTAACGCAATATTGTAACACATTTATTTACCTTTTTGGCAGTAACGCAATGTTGTAACAAATTTATTTACTTTTGGGAGAGACGCAATATTGTAACACATTTAGTTACTTTTTTGGGAGTAATGCAATATTGTAACACATTTAGTTACTTTTGGGAGTAACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU308086 True 4912 lncRNA 0.37 1 3581408 3586319

Neighbor

gene id symbol gene type direction distance location
CI01000066_03569446_03579757 GPR37B, GPR37 coding upstream 619 3569446 ~ 3580789 (+)
CI01000066_03460752_03462377 NA coding upstream 118493 3460460 ~ 3462937 (+)
CI01000066_03354136_03429399 GRM8A, GRM6, GRM8, GRM8B coding upstream 151892 3353662 ~ 3429516 (+)
CI01000066_03303268_03342257 GRM7 coding upstream 238803 3298872 ~ 3342605 (+)
CI01000066_03241522_03246506 GRM8 coding upstream 334606 3241522 ~ 3246802 (+)
CI01000066_03613544_03614533 NA coding downstream 26402 3612721 ~ 3614554 (+)
CI01000066_03635228_03648059 NA coding downstream 48909 3635228 ~ 3648417 (+)
CI01000066_03664429_03674503 NA coding downstream 78110 3664429 ~ 3674959 (+)
CI01000066_03676366_03678849 PWP1 coding downstream 90047 3676366 ~ 3678849 (+)
CI01000066_03686086_03690640 UBE2NA, UBE2NB, UBE2N coding downstream 99612 3685931 ~ 3691102 (+)
G271435 NA non-coding upstream 316974 3256652 ~ 3264434 (+)
G271485 NA non-coding upstream 377236 3203396 ~ 3204172 (+)
G271461 NA non-coding upstream 460507 3120666 ~ 3120901 (+)
G271478 NA non-coding downstream 28642 3614961 ~ 3617633 (+)
G271486 NA non-coding downstream 69858 3656177 ~ 3657351 (+)
G271490 NA non-coding downstream 72925 3659244 ~ 3659526 (+)
CI01000066_03211701_03215444 NA other upstream 365962 3211701 ~ 3215446 (+)
G271105 NA other upstream 1142239 2430710 ~ 2439169 (+)
CI01000066_02296138_02305439 CMAH other upstream 1274388 2296071 ~ 2305637 (+)
CI01000066_02274624_02277624 NA other upstream 1301848 2274557 ~ 2278119 (+)

Expression


Co-expression Network