Gene
RNA
| Item | Value |
|---|---|
| gene id | G272626 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000066 |
| NCBI id | null |
| chromosome length | 3719324 |
| location | 3602979 ~ 3603234 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU309398 | True | 256 | lncRNA | 0.40 | 1 | 3602979 | 3603234 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000066_03454386_03455995 | NA | coding | downstream | 146813 | 3454330 ~ 3456166 (-) |
| CI01000066_03439936_03446824 | NA | coding | downstream | 154121 | 3439679 ~ 3448858 (-) |
| CI01000066_03203296_03203476 | NA | coding | downstream | 399503 | 3203123 ~ 3203476 (-) |
| CI01000066_03158972_03165320 | PIK3CG | coding | downstream | 437659 | 3158316 ~ 3165320 (-) |
| CI01000066_03044933_03045997 | NA | coding | downstream | 556982 | 3044336 ~ 3045997 (-) |
| CI01000066_03649007_03654018 | LMOD2 | coding | upstream | 45698 | 3648932 ~ 3654018 (-) |
| CI01000066_03655461_03659325 | ASB15B | coding | upstream | 51598 | 3654832 ~ 3659717 (-) |
| CI01000066_03711890_03717941 | PMPCB.L, PMPCB | coding | upstream | 108215 | 3711449 ~ 3717941 (-) |
| G272624 | NA | non-coding | downstream | 3857 | 3598798 ~ 3599122 (-) |
| G272618 | NA | non-coding | downstream | 10541 | 3592149 ~ 3592438 (-) |
| G272615 | NA | non-coding | downstream | 13611 | 3588995 ~ 3589368 (-) |
| G272614 | NA | non-coding | downstream | 14450 | 3588328 ~ 3588529 (-) |
| G272613 | NA | non-coding | downstream | 15178 | 3587556 ~ 3587801 (-) |
| G272622 | NA | non-coding | upstream | 12633 | 3615867 ~ 3617620 (-) |
| G272630 | NA | non-coding | upstream | 16134 | 3619368 ~ 3619594 (-) |
| G272604 | NA | non-coding | upstream | 59320 | 3662554 ~ 3666238 (-) |
| G272637 | NA | non-coding | upstream | 72429 | 3675663 ~ 3678834 (-) |
| G272640 | NA | non-coding | upstream | 89545 | 3692779 ~ 3701605 (-) |
| G272221 | NA | other | downstream | 1617751 | 1959102 ~ 1985228 (-) |
| CI01000066_01843043_01848783 | NA | other | downstream | 1754120 | 1842554 ~ 1849466 (-) |
| CI01000066_01823227_01826380 | NA | other | downstream | 1778276 | 1823029 ~ 1826817 (-) |
