XLOC_010461


Basic Information

Item Value
gene id XLOC_010461
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 9759176 ~ 9761753 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022117
cagaAAGACAATGTGAAAAACATCACCACATTACTGAATGATGGTAGGAGAAACAGGCTGCAAACACCACACAAGAAAAAGGCATTTCCGTGACTTGcttatatacatattttgtaCATGTTTTATACACGCCCGATAAAAATATAGTCCTCAAAGTACTTACAGTTGTCAGTCATAGTTCCTGACACCATCAGACATTCAGATGTAGAAAAGCCCAGCAAGAGCTTTCacagattttaaaatgaatagaACTTTACCATGGACATTCCCTAaacacataaaatacaaaatatgctTTATATTGTCAAGAACTTCCCTCTGACCTGAAATAAAATACATAGTAAGATCACGAAAACTACTGCCAGATTACAAAGCCTATTACAATCATTTATATGGTACATAGAGAATTGAAAATCCATTCAGTTCTGCAAAGGCAAATCCTTTGCAAATATTCACTTCGGTCCCAAACTCCAATGGTTTTAAGAGCTGCAGTTTCGCCAACGGTTTTATTTGGGACAACGCGATACTGTTCGAGACTACAGCCAGCCCTTCATCTAAATGTTTCAAGAGTGCAAAGCCAGTCTGAGATCTTAGCGTGTGCAAGAGGTATCAAGAAGCCTGAAATGCTTCAGACTACACTATTTCCATTACAGTCACTGAGAAACTCGAAGTACAGGCTGTCAAAATTATTCGTTTTCTTTAATAAACAAAGCTCTGATGGATAGAGATTCATCAGGCAACAGTTTCCTTTGCGTCTGCTCTATAAACTAGTGTTTACATTACTTCATTAGTGTCTATTTTCCTTACTCggtttatatgcttatttattcTTAAGAGTCTAAACAGCACAAATGTATCAAAGAAATTCCCCATGGTTAAAAAAGATTTTCCATCATTTGAACTGGAAATTGCAGCAATATATCAAACTGGAATGTAAATTTGCCAACATTCCTGATATTGATGAAAAAATTCCCAGTCTGGTCTACACATTACAGGGTTTTGTGGGATTCTAGAAAACACTTGAATGAAAAACATCGTGTAACAAAATCCTCAGTGACGGCATACCCGAAATGTAGCAGATCATGTTGGTCCTTATGTTTGGAGGCCATGTAAGTTTTGAAAATGAGTGTTTTTAATACCAACACGCTGCATTAAGGCAGATGACTGGAAGACATCATGGCACGATCTAGAAATCAGTCTAACGCAACATGTTTGTTAAAAGACAATAGCTGCTGTGCTAGAGGAGCACATTAGTAGCATGTTATAACATACCAGGACACAGaaggaataattatttacagAATTATATACATAAACAACACGCAGATATTAGGCGGCCCTCGGTATGGCGGCAATATGTGCGTTGATTAAATAACGAAAACGACGTGCAAGCGGGTCTGTCCGTTTCTCAAAGGTGAAAGCTGATTGGTCCAATGTGCAGGAGCAACTTTCAATAGGACAGGGTGGGAAGAAAAGGCAAATGCATAGAGATGCTGAGTTGATGTGAATTAAACAGCTTCAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022117 True 1523 lncRNA 0.38 2 9759176 9761753

Neighbor

gene id symbol gene type direction distance location
XLOC_010460 COLEC10 coding downstream 64354 9680908 ~ 9694822 (-)
XLOC_010459 mal2 coding downstream 83194 9672126 ~ 9675982 (-)
XLOC_010458 FO704756.1 coding downstream 192805 9564503 ~ 9566371 (-)
XLOC_010457 prpf3 coding downstream 305585 9433738 ~ 9453591 (-)
XLOC_010456 ccr8.1 coding downstream 333725 9421002 ~ 9425451 (-)
XLOC_010462 tapbpl coding upstream 25630 9787383 ~ 9802998 (-)
XLOC_010463 grhl2a coding upstream 45510 9807263 ~ 9830451 (-)
XLOC_010464 ncalda coding upstream 71503 9833256 ~ 9897769 (-)
XLOC_010465 id4 coding upstream 216105 9977858 ~ 9980402 (-)
XLOC_010466 NA coding upstream 251232 10012985 ~ 10013605 (-)
XLOC_010626 CR392024.2 misc upstream 11133359 20895112 ~ 20895175 (-)
XLOC_010455 CR394537.1 non-coding downstream 456982 9302079 ~ 9302194 (-)
XLOC_010452 NA non-coding downstream 1079714 8668981 ~ 8679462 (-)
XLOC_010450 CU062417.1 non-coding downstream 1280167 8478880 ~ 8479009 (-)
XLOC_010447 CR478208.1 non-coding downstream 1470729 8287771 ~ 8288447 (-)
XLOC_010472 NA non-coding upstream 659417 10421170 ~ 10429893 (-)
XLOC_010473 NA non-coding upstream 663994 10425747 ~ 10428540 (-)
XLOC_010477 NA non-coding upstream 1087953 10849706 ~ 10859614 (-)
XLOC_010478 CU468227.1 non-coding upstream 1154537 10916290 ~ 10916404 (-)

Expression


Co-expression Network