XLOC_010462 (tapbpl)


Basic Information

Item Value
gene id XLOC_010462
gene name tapbpl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 9787383 ~ 9802998 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020544
AAAACAATACTCACTTTTATTTTGAATCTGCCAATGAGGAAGAACGGTGATCAAAAGTGAAAGTGCAGGCTAGCAGCACCTTCTGAAAGCATCTCTGTTCGGTTTCGACGTTGGTATACCGAGAGCCGCTTCATGTCTCTGACTAAAATGCGTGTTTGTTCAGTTAATATATGCAGATAGTAAGCGACATCCAGCAAAACTACAGTATTAGTTGTCTTGTCAGCAGCTGCTCGGTGATGTTAACGCTCCTCGTCTCCCTTTCTTTGGTTTATGGTGAGCTCTGTTTATTCGTGTGTTCCTGCCTTGTTTTCGGTCGGTCTGCTAATATATGTACATAGATagattaaatatgaaataatatagaATTACTTTACTGTCTTACGTAGTTAAAAGGAACATATTAGATTTGCTTTCGgttttattttcaatagtctGACTTTGGTAGCTTTTGGCTCCTCCTGCTGTTGTGGTGAACGTACTACTGTCGTCACAGGGCTGGATGGTGCTGATGTGGTTCTGTCCTGCTCTCTGATCGAGGAAGGGGGCGGGATGGGCGGCATGGGCGGCATGATGGGAGGGGCGATGTTCAAGCGCACTCCCGCCACTCTGGTCTTCAGGGATTTTGTTGAGAATGAAGGTCTGTCACCAGAGCTTGTGACCCCCTATAACCCTCCTGAGACCCCTAATCCCGAGGATCTCATCTTTGAGTTGATGTTACCATCCATTCAGATCCCCAACGCAGACTTGCTTCTTCACGCTGACTGTAATGAACAGGAAGTGGTTTGTGAGATCAGCCGTTACGTTCCTCGCGGAGCTGATATGGATTCCCTACCAGCTCATTTTATTGGCTCAATTCAGCTGGAAGGTGGAGGCATCAGCCTCACTCTGGTGCTACAGACCCTCCACAGTGAGACCACACAATCTGATGCGCAACCACTTATGCAGAGTAAACTGAATCTGCCTCTCAGCCAATCAGCAACGTTGCTGACAGAAGTTGTGTTTGTGGTGTTCTCTCGTGTACCATCCATTGTGGCATTAATAGGGGGTGATGTGATGTTGGACTGTGGCTTCAGACAAAAAGAGTCTGTCCCTGGGCAGGATGTGGCTCTGGAGTGGCGCCTTCAACACAGAGGAAATGGCCGTAAAATTCTTGATATGAAGGCAAGGGAGATGGAGACAGAAATAGGATCAGATGTATTCGTGGACCGGGAAAACACCAGCACTGAAGCAGATCTTCTAGTGAGGGATGGAAATGCCTCTCTAACTCTCAGGACATTGCAGGTCTCAGATGAAGGCACATACATCTGCACCGTGGGCTCTGGAGACTTTCAGACTCAACAGATCGTGCAGCTTCACATTACACAACCGCCTCGCATCACACTTTCTGAGGAGAAGCTGTCATTTCCGGATAGGACACCTCAGAGACTTAGCTGCCATTGCAATCGCTACTACCCTCTGGATGTGCAGGTGGAGTGGTTTTCACAGGCTCCGTCTTCAGAAGAGTCTATCTCGTTGTCTAAGGACTCCTCGCTCTCCAGTCATCGGCAGCACAGTGATGGAACATTTTCTGTCTCTTCTCACCTCACCCTGTTACCAGACAAACACCCACCGGGGACTGTTGTCACCTGTAGAGTCTCACATCCCTCCCTAGAAACTCCAACTAATGCCACCCTCACTGTGGAAGAACCTGAGCCAGATACAGCTTTCTGGACAATAAGCTTGATGTTGCTGATATCAGTGGTGTTTTTGTATCAAGCGTTTAAAGGTGGAgtgttttaagAGAAAAGCAGCAGCAACCTACTGAAAGAGGTCTTGGAAGGAACCATTTTCGTTATTTTGATTTGCCTTTTTCTTCATCCGTCTTTAAAATGGATTTGTTTCCCTCAGTCATGGCACATTTGTTTAAGTTTGAGGTTTTCTGTGTGGCTTATTCAGtaaaagtaaaacaacaacaaaacaaaagatgatttttaatTGTAATGTTTTGATTGTGTAATGTTTATGTGTTGTACATTTTATTTGCTTTAGTGAacgaaataaaaacagaaacagaGATGAGTTTTGTTGAAGGTTTTATTCAGGGGCATATAAGCATGCGGTTTATGCCATTAAAATCTTCCAGTGGCTGATTTTACCCCTCTGTTAGCCCATACaccctttcattcattcagatttatgcacataataaataaaacatcatatACTTTGCCTTTGTTAACATTACAAAACAAGAATACACATATAGAAGTTCTCcaacaacaaaactaaatataaaagacTGTGCTGAGGAAGGAATGTGAACCAACAATAGTAAGGAATGTGAAAACCAACACTTACATATTGCATGGCAGTATAGACTATTGTGTAGGCGTTTCTGCATTGATTATCTGGTCACTTGTGTATGTTTCAGTACATTTTGGCAGGACTGTAGCATTCATGTCTTGTTCCCAGATTAGGCGTTTTCACAGAACAGGTAATTGAGGTTTATTTTGTTCTTAACAGGCAGTTAATAGTAATAAATCAACAAGTCTAACAGTGGATTGTTCCGCCATGCAAATCAGGGGACATCAAATCAACTTCAAACACCTTAAGCCTTCTATTTTACccttcatttcattaaaaaagttGTGTCGAAAAAAACAAGAGTTTTACAGAAAAGTTTTACAGAGTGTGAAAACTACTTTGAATTCGAAACAACCGTTTTTACTGTAAACTTTTTTTAcacgttttttgttgttgttgttgttgttgttcatggTTGTTAAAGGATTTTAATGGGATCATTGATGCCAtaaacactcttaaaaataaaggttccaaaAGGACAACTTTTCTTTGAAGAAACTAATAACAATTCTTCAAAGAAGCACTTTTATTTCTAAATGACTAAGATCTAAAGATTCCTTTTCCactataaataacttttttgttttgGAAAATGGAGAGGTTCTTTAGAGGTTAAAGGTTTCTCATGGAAACtattaataacaaaacaataatgcCAATGCAATGGAAATAATCTAAATATGTGTAGGGATAAGCTAGTCTAAATTTGTAGAATGTCAGATGGAAGGTTTTTTTTCCACAcactcattttttttataaatgctcAAACATTCTCTGTTTTACATACAATACCACTCAAGAGTTTGTTATTCAAATATTAGCTGATATTGGTATTCTCATATAGTCTAAACAGTAATGAGTAAACAGCAAATAATTATTTTGGTTGAATCAACTTTATACTTATCATCAGTGATCTTAACTTACaacagtcaaactgactaaagatTTAAAGTTTGAAGGTAAACTTTGACTAAAAATGTTTAGCTGAAACCTGATGAATGAATGTAACACTGAAGCATTTGTTGTCATTTCAATTTTTAGAGTACTGATATTTCATATTTTCTTTCCACCTATTAGAAAAACCTAGAGGCTCAGCACACACAAATGAACTAATTTACACTAATTAACACACAAGcagctgtaaaaaaataaataaatgaagctgCTGAACATATATGAGCAGTAGGCAGTGACCTATTTTCTGCATCTTAAATCCTTCATGCTACATGAAACTCTTCTTTTACATTTCTGTTGTGGAATcgaatacattttattaatgaatttaattcatttattattgaaTTTCAAAATTTTTAGTTGTAGTAATTGTATGTGTCAttctatatatataaatttattatttacaataatttaaattgttttagctGTAGCTTTACCAAAAACAACAATAGTcacaattaataaatgtaataattaataatagctgcacttatttgatcaaaaatacattcGTTTTTTTTCAATCGTTTTGCTACAAATTTCAGAATCCagatgtcaattttcaaaactctataAACACAAAATTTACAACCATTGCCAAAATCGCACGTTTTTACAAAActcttaactcttttttttttttcaaatgcttggATACAATACAAAAGTCAAATATACTTTGTTCAATAAACTAAACCCCCCTTTACAATATAACACAATTGAACCAAATTGATCCCATTTCCAAAAGCAACtcaaacattacatttgaaataacTGTGCATTAATTAAATCAACACGATGTAACTATCAACAGATACAAGTGCTTGAAATAATAAGTAACTGCTGCATTACTCTTGATGCATGGATACTGATGTACAACATTACATATTTAGATGATGAAAGTTTTAGGATAGGCATCAGTTAGCACAGAAGATGACCCAAAAAGACACCATCATCTATTGATTTCATCCTTATTCATCCTTATTCCTCATATATGAGTTCCATGTAtcacttttacaatgtattacAGGCATGCAGAGTTTTGAGCACTGAGAGTCTGTGTTAAAAGTGGTGACTGTTTTgaattttgaaaattgacatcagggttctgaaatttaaagcaaaacaattgaaaaaaaaaaaagatgtttcttTTTATATGCTAATATCGTAAAATACTTTTAACAATGCAAATGAACAATGTTTGGTTTCAATATTGTTTAAAGCTGGTAATATTGATTAACAAATATTGTGTAACATTTAATTGATGAATTTTACTATAATCTGACATATTACATATTACAGAGACAATACTATCTGCGTCATAGTTTTgtgtaaaataatagtaattgaTCGGTTTGAATGTAACttccaaattttattaaaatctgtATGAAATCAAGGTTTGCCATTTTAGAGTCATGATATTTTTAACcaccattagtttgc
>TCONS_00020545
ATGGGCGGCATGGGCGGCATGATGGGAGGGGCGATGTTCAAGCGCACTCCCGCCACTCTGGTCTTCAGGGATTTTGTTGAGAATGAAGGTCTGTCACCAGAGCTTGTGACCCCCTATAACCCTCCTGAGACCCCTAATCCCGAGGATCTCATCTTTGAGTTGATGTTACCATCCATTCAGATCCCCAACGCAGACTTGCTTCTTCACGCTGACTGTAATGAACAGGAAGTGGTTTGTGAGATCAGCCGTTACGTTCCTCGCGGAGCTGATATGGATTCCCTACCAGCTCATTTTATTGGCTCAATTCAGCTGGAAGGTGGAGGCATCAGCCTCACTCTGGTGCTACAGACCCTCCACAGTGAGACCACACAATCTGATGCGCAACCACTTATGCAGAGTAAACTGAATCTGCCTCTCAGCCAATCAGCAACGTTGCTGACAGAAGTTGTGTTTGTGGTGTTCTCTCGTGTACCATCCATTGTGGCATTAATAGGGGGTGATGTGATGTTGGACTGTGGCTTCAGACAAAAAGAGTCTGTCCCTGGGCAGGATGTGGCTCTGGAGTGGCGCCTTCAACACAGAGGAAATGGCCGTAAAATTCTTGATATGAAGGCAAGGGAGATGGAGACAGAAATAGGATCAGATGTATTCGTGGACCGGGAAAACACCAGCACTGAAGCAGATCTTCTAGTGAGGGATGGAAATGCCTCTCTAACTCTCAGGACATTGCAGGTCTCAGATGAAGGCACATACATCTGCACCGTGGGCTCTGGAGACTTTCAGACTCAACAGATCGTGCAGCTTCACATTACACAACCGCCTCGCATCACACTTTCTGAGGAGAAGCTGTCATTTCCGGATAGGACACCTCAGAGACTTAGCTGCCATTGCAATCGCTACTACCCTCTGGATGTGCAGGTCAGCTACATCACAGCAGACGACAAATCAAATCAACCTGAGTGA

Function

symbol description
tapbpl Predicted to act upstream of or within antigen processing and presentation of endogenous peptide antigen via MHC class I. Predicted to be located in membrane. Orthologous to human TAPBPL (TAP binding protein like).

GO:

id name namespace
GO:0019885 antigen processing and presentation of endogenous peptide antigen via MHC class I biological_process
GO:0016020 membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121003-1 Predicted to act upstream of or within antigen processing and presentation of endogenous peptide antigen via MHC class I. Predicted to be located in membrane. Orthologous to human TAPBPL (TAP binding protein like).

Ensembl:

ensembl_id ENSDARG00000058351

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020544 False 4755 mRNA 0.36 8 9787383 9802998
TCONS_00020545 True 963 mRNA 0.50 5 9793868 9802449

Neighbor

gene id symbol gene type direction distance location
XLOC_010461 NA coding downstream 25630 9759176 ~ 9761753 (-)
XLOC_010460 COLEC10 coding downstream 92561 9680908 ~ 9694822 (-)
XLOC_010459 mal2 coding downstream 111401 9672126 ~ 9675982 (-)
XLOC_010458 FO704756.1 coding downstream 221012 9564503 ~ 9566371 (-)
XLOC_010457 prpf3 coding downstream 333792 9433738 ~ 9453591 (-)
XLOC_010463 grhl2a coding upstream 4265 9807263 ~ 9830451 (-)
XLOC_010464 ncalda coding upstream 30258 9833256 ~ 9897769 (-)
XLOC_010465 id4 coding upstream 174860 9977858 ~ 9980402 (-)
XLOC_010466 NA coding upstream 209987 10012985 ~ 10013605 (-)
XLOC_010467 cep76 coding upstream 222898 10025896 ~ 10053049 (-)
XLOC_010626 CR392024.2 misc upstream 11092114 20895112 ~ 20895175 (-)
XLOC_010455 CR394537.1 non-coding downstream 485189 9302079 ~ 9302194 (-)
XLOC_010452 NA non-coding downstream 1107921 8668981 ~ 8679462 (-)
XLOC_010450 CU062417.1 non-coding downstream 1308374 8478880 ~ 8479009 (-)
XLOC_010472 NA non-coding upstream 618172 10421170 ~ 10429893 (-)
XLOC_010473 NA non-coding upstream 622749 10425747 ~ 10428540 (-)
XLOC_010477 NA non-coding upstream 1046708 10849706 ~ 10859614 (-)
XLOC_010478 CU468227.1 non-coding upstream 1113292 10916290 ~ 10916404 (-)

Expression


Co-expression Network