CI01000068_00582352_00600267


Basic Information

Item Value
gene id CI01000068_00582352_00600267
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000068
NCBI id null
chromosome length 1053214
location 582054 ~ 601519 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000068_00582352_00600267.mRNA
AGACTCTGGGGTTTGGGGTTAGGCGTAACTAACTTGAAGCCTATATGCACTAGGGTTTGCATTGTACTGTAATGAACAGTTTTGTTGTTCCTCAAAAGCTGAATTGTGTCCTTTGTCGGTGTGTAGCCCAATAAAGTGTACAGGTTGAAATATCTCTCCTCGATCATTGAGTTCATGAGCAAAACATAAACATACTGATGTTGTTTAAGCAATTTCAATACACATTTGCATGCTTTTGTCACTAACAAAAGTACAATGGTGAAACATGATTTTAATATGAAGTACCATGATTTGAAATGCTTATGTTTATATTTTTAGTTGTTAATTTTATGCATTTTTGTGATTTTATTTTTTATTTATTTCCAGTTAATAATTTTAGCGCTTCAACTTATTTCAGTTTATTGCCAACTTTTCTTATTTTGGCTTGCTTTGTTTTCTTAACTGATGTTTCTATTTCATCACACACTGTGTTTTCTGTCTCTTTTTTGTATAATTCAAACTAAAATCAGTGCATTATCATTTTTAAAATAAGCAAAACAATATAAACTCAAGCCACTTCATATTCAGGTAATTTTAAAGAATATTTTTACATCAGTTTTTAAGAATTATGCCTTTTATAAGGGGTTTCTCAACATCTTAATATTTATATCTGTGTGTGTGTGAGTGTGTATTTATATTTATATATTTATATTTTTTCATTTTTTTATATTTTTATATTTATATATAAATAAATATATACACATAGCTACACATTTGCTTGTTAAATGGTTCTCTGAAATATTAAATTCGCATTTTTTGTATAATTCAGTCTAAAACCAATTCATTTTATACATACTATATATATATATATTACATTTTTTTTATTATATATATATAAATAAATATATACACAGCTACACAACATTTGCTTGTTAAATGGTTCTGTGAAATATTCACCAATGCATTATTTTAACACAATTTAGAGAATATTTATATAAAGATATACAATTATGATTTTTATTTGGGGTTTCTTAAATATTTTTATTTTTTCAAAGGACATGTTTGTCTCTATATTTAGTCCTTAGGGTAAGAGCCCTATTTAGTGAAACTCTCTCGATGTGGACTGAACCCTGTCCGTGGTCCTGAACGCGCATGCGCACGCGATCAGCTCGTGCGGATCCTCCAACCTGCACAATTAAAGCGCTTTGCCTGCATTTCCACTCAATAGAGCCGCTGCAAAAACACCATCAAACGCCATTTTCAATGAAAAGACATGGAGCGGCCGGACAGCGAATACTGCAGCTTTGAAAACCCGCTGATCAGCGAGATGAAGCATTTCTGCAAGAAGATACAAGAAGCCTGCAACGAGCTGAAGGAGGATCTGACGCCGTACAAAAACGAGCGGTTCTACAGGTTGGCCCCCATGCGTCTCTACACTCTCTCTAAGAGGCACTTTGTTCTGGTGTTCGTGGTTTTCTTCTTCTGCTTCGGCGTCTCTACCCTCATCGGTGTGTCAGGTGAGATCTCTGGTTTCCTGCAAACAGTGGGCCGATTCAGCCGTTTCCCAGCATTCACCTGCTGTTCCTTTGAGAGAGTCACAGTGAAGGTCTGCGTGGATAATGAACCTGCAGATCACATGATTCTCAACCCTCAAGAGATTCAAGCAATTAAAAGACCGAAGATCATCAGTGAGAATTATCACAACGGTTTAAGCATCAGTGTCAATGGATCAAAGAGACCACAAAACTCCCCCGAGGCGGCCGAACACGTCAACAGGGTAAAAGAAGAAACCCTTGGTCACAGATGGGCCAAACTATCAGTGCCGAGAGGAACAAGACGCTCTGAGAGACCGAGTCTAGTGCAATTCCTCATTTACTTCATGCACATCAGCGCAGCTGGAAAACATGATATCAGTGTTACCTACAGCACCACAGACCCAGAGAACAGAGAAGTCATTCAAAAGGCAGAATATCAGACCATAGATGTCTATAGTTGCAGATTAAACACCAAAGAGAGGCTCTTTTATATCATCAAAAAATCGACCGATGAGATACGGTGGTACTGCGCATGCTCGTTCACAACAGTGGCGCGCGGTCGGGGTCCTGAGTCCTGCTTCGTAATTCCTCGCGTTTTAAAGGAATTCTTATCCATTTACCCGACATCCTGAGCCAGCCTGTAACACTTACCAGCCACAGTGAAGACCCACTAAACCATCTGTTTTAATACCTCAGAGTACATGTGCTTCTCATTAATCATATCATAATCATAACACCTCACCGCCAAAAACATCAAAATATATCATGAATATAAGCGACGACAGATCGCAGATAAAACCCTGTACTGGCACATCCCTGCATCATCAGCCTACTAGAAGAGGAATGAGAAAATCCATAAGGACAGTGAACGAAAACTTCACTCAGCACCATCTCAGCTGAAATATGCTCCCAATTCTACTGAACAATAAA
>TU309991
CTGAACGCGCATGCGCACGCGATCAGCTCGTGCGGATCCTCCAACCTGCACAATTAAAGCGCTTTGCCTGCATTTCCACTCAATAGAGCCGCTGCAAAAACACCATCAAACGCCATTTTCAATGAAAAGACATGGAGCGGCCGGACAGCGAATACTGCAGCTTTGAAAACCCGCTGATCAGCGAGATGAAGCATTTCTGCAAGAAGATACAAGAAGCCTGCAACGAGCTGAAGGAGGATCTGACGCCGTACAAAAACGAGCGGTTCTACAGGTTGGCCCCCATGCGTCTCTACACTCTCTCTAAGAGGCACTTTGTTCTGGTGTTCGTGGTTTTCTTCTTCTGCTTCGGCGTCTCTACCCTCATCGGTGTGTCAGGACCGAAGATCATCAGTGAGAATTATCACAACGGTTTAAGCATCAGTGTCAATGGATCAAAGGTGAGATTTGTTGTTCTGCGAAAATAGACTTGATTTTCTTTAAAAAAAAAAAAATTAAAAAAAAATCACTACAGGAGTAAATAAGATTTTCTTAATGTTTGTGA
>TU309990
CTGAACGCGCATGCGCACGCGATCAGCTCGTGCGGATCCTCCAACCTGCACAATTAAAGCGCTTTGCCTGCATTTCCACTCAATAGAGCCGCTGCAAAAACACCATCAAACGCCATTTTCAATGAAAAGACATGGAGCGGCCGGACAGCGAATACTGCAGCTTTGAAAACCCGCTGATCAGCGAGATGAAGCATTTCTGCAAGAAGATACAAGAAGCCTGCAACGAGCTGAAGGAGGATCTGACGCCGTACAAAAACGAGCGGTTCTACAGGTTGGCCCCCATGCGTCTCTACACTCTCTCTAAGAGGCACTTTGTTCTGGTGTTCGTGGTTTTCTTCTTCTGCTTCGGCGTCTCTACCCTCATCGGTGTGTCAGGACCGAAGATCATCAGTGAGAATTATCACAACGGTTTAAGCATCAGTGTCAATGGATCAAAGGTGAGATTTGTTGTTCTGCGAAAATAGA

Function

NR:

description
Si:ch211-51e12.4 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000068_00582352_00600267.mRNA False 2444 mRNA 0.38 8 582054 601519
TU309991 False 541 TUCP 0.45 3 597208 600398
TU309990 True 465 TUCP 0.49 3 597284 600398

Neighbor

gene id symbol gene type direction distance location
CI01000068_00496537_00503427 NA coding downstream 78627 496279 ~ 503427 (-)
CI01000068_00478512_00488030 XPOT coding downstream 93152 477047 ~ 488902 (-)
CI01000068_00466560_00470556 NA coding downstream 111498 465807 ~ 470556 (-)
CI01000068_00449335_00450163 NA coding downstream 131891 449335 ~ 450163 (-)
CI01000068_00442295_00444826 NA coding downstream 137228 441650 ~ 444826 (-)
CI01000068_00603672_00617563 TULP4A, TULP4 coding upstream 1185 602704 ~ 617563 (-)
CI01000068_00621885_00631220 NA coding upstream 20033 621552 ~ 631462 (-)
CI01000068_00633935_00634363 NA coding upstream 31448 632967 ~ 634374 (-)
CI01000068_00635820_00636616 NA coding upstream 34245 635764 ~ 636616 (-)
CI01000068_00644494_00651464 NA coding upstream 42463 643982 ~ 651464 (-)
G273147 NA non-coding downstream 125749 456069 ~ 456305 (-)
G273146 NA non-coding downstream 127975 453732 ~ 454079 (-)
G273145 NA non-coding downstream 128757 452963 ~ 453297 (-)
G273144 NA non-coding downstream 129491 452331 ~ 452563 (-)
G273141 NA non-coding downstream 140467 441367 ~ 441587 (-)
CI01000068_00679462_00683567 NA non-coding upstream 71161 679021 ~ 683567 (-)
G273171 NA non-coding upstream 92258 693777 ~ 694400 (-)
G273192 NA non-coding upstream 185942 787461 ~ 787662 (-)
G273042 NA non-coding upstream 349043 950562 ~ 952947 (-)
CI01000068_00663458_00672380 DPYSL5B, DPYSL5 other upstream 60685 662204 ~ 672380 (-)

Expression


Co-expression Network