CI01000068_00748555_00755073 (SIM1, SIM1B, SIM1A)


Basic Information

Item Value
gene id CI01000068_00748555_00755073
gene name SIM1, SIM1B, SIM1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000068
NCBI id null
chromosome length 1053214
location 748164 ~ 755073 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000068_00748555_00755073.mRNA
GGTCTGAACACATTAATGGTCACTGCATTACCATGGTAACGGTGATCCACTGCAGCGGCTATCTGAAGATCCGGCCGCTGGGTCTGGACGCGTCTCCGTTCGACGGCTGTTATCAGAACGTGGGTCTGGTGGCGGTGGGACACACGTTACCGCCCAGCGCCGTCACCGAGATCAAACTTCACAGCAACATGTTCATGTTTCGGGCCAGTCTGGATATGAAGCTCATTTTCCTGGACTCAAGGGACACTGAATATAAGGGCCTGCTGCTGTCTCTGGACCAGCTGAACCCCAGTAAACCTGCGTTCCCGTACACGAACCACACCGAGCGAGAGGACAAACCTCAAGTGTCGAACGCCAGGAGTAAGATCTTGGTTTCTCCTTACTCACAGCAGTTCTCGGCCTTCCAGCCGGATCGCTCGGATTCCGAGCCCGACAGCCAATGGGGCGGCAGTCCTCTGACAGACTCCGCCTCTCCGCAGCGCCTGGATCACAGCGACGCTGACAGACGCTTCCCCGAGGCGGGAGTTTCCCTGTGTTACGGTCTCTCTCAGGCTGACGTCATGCACATGGCCTCACACGCGTGTCCTCCAGCACACGCACACGTGCCGCCGTGTGATCCGGCCGGACGTTACGGCTGGTGGGACGCCACGCGATCTGTCCCGTCTCTTACTAAAGCAACTCAACACAACGGAGGAGAGTTCGACGGCAGAGCGTTTCCTCATGCTCACGCTCACTGGGATGACGAGTGCGTGGTCAGTTCTCCGGAAGGAGGAGGAGGGTCGTCGGGTGATTCTGGAGACAGTTGCCATGACAACGGGCCGTTTCACTCGAGCCCACGGGAGTCCGAGAGGATGGAAACCCTGATCAGAGCCAAACAGGAGCTGATTAAGGTGGAGGACAGTCAGATAAGAGATTACCCCTCTTCCGTCCTGTTTTCCTCCATGGTCTGCCGAGGGCCACCGGGGCCCCGCCTCATCCTGAGCCGAGACGACGACCAGGACGGGAGAAGTCCCGCGTCTCTGTCCGGTCTGAGCAGTCCGGGGTCTGCGGGCGACTGTCGGCAGCCGCTGGACAGAGAGACGCTGGACGGGCTGGTGCGCTCGGGTCGCCTGGAGCCTCCCGACGGGGCCGAGAGCCTGAGAGCTTTTCCCGCTCATTACGATGTGAACTCACACATGCACTTTCAGACGAGCGCCGCGCACACACACAACGGCACATCGGTCATTATCAGCAACGGCAGCTGACGGGAAAAACACTCCTCTACCTTCTCAGCTGGAGACGAACCGATCGGCTAAAAAAATCAATGTTAACATGGAAAAAAGAAGGAAAAATCCCTCATCACACCAGTACTGTCAAGAACACGTGTAGGTCACATCTCAACCCGAAGAAAACGAATAAATTATATTTTACATGAAGAAAATGAAGTCTTAATTCTCATTACTTTGATGCAAAACCAATTCCAGATCATTGGAATTACAGTAATGAGAATTTGATTATTATAATCATAAAATAATAAGCTTCATTTTGTTTGTGCAGAATATATTTTTTGGAAATTTGAGGTGTAATATTTTTCACCCACAAAATTATCAACACTGTCAACTGAAATTAAGTTTTATACACAATCAATTCAATAAA

Function

symbol description
sim1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within nervous system development and proximal tubule development. Predicted to be located in nucleus. Is expressed in several structures, including basal plate midbrain region; central nervous system; corpuscles of Stannius; intermediate mesoderm; and pronephros. Human ortholog(s) of this gene implicated in obesity. Orthologous to human SIM1 (SIM bHLH transcription factor 1).
sim1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell differentiation; nervous system development; and regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription regulator complex. Is expressed in caudal tuberculum; diencephalon; hypothalamus; midbrain; and preoptic area. Human ortholog(s) of this gene implicated in obesity. Orthologous to human SIM1 (SIM bHLH transcription factor 1).
sim1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and protein heterodimerization activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and ureteric bud development. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in obesity.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K09100 SIM; single-minded

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000068_00748555_00755073.mRNA True 1635 mRNA 0.53 5 748164 755073

Neighbor

gene id symbol gene type direction distance location
CI01000068_00728788_00730622 NA coding downstream 17542 728558 ~ 730622 (-)
CI01000068_00713308_00716436 NA coding downstream 31728 713308 ~ 716436 (-)
CI01000068_00704059_00713223 NA coding downstream 34941 704059 ~ 713223 (-)
CI01000068_00679462_00683567 NA coding downstream 64597 679021 ~ 683567 (-)
CI01000068_00663458_00672380 DPYSL5B, DPYSL5 coding downstream 75784 662204 ~ 672380 (-)
CI01000068_00827970_00830234 NA coding upstream 72547 827620 ~ 830234 (-)
CI01000068_00835450_00835656 NA coding upstream 80246 835319 ~ 835656 (-)
CI01000068_00847176_00865067 LRIG3 coding upstream 91601 846674 ~ 866781 (-)
CI01000068_00902023_00912480 NA coding upstream 146471 901544 ~ 913493 (-)
CI01000068_00919068_00936117 ETV6 coding upstream 163668 918741 ~ 936595 (-)
G273171 NA non-coding downstream 53764 693777 ~ 694400 (-)
CI01000068_00644494_00651464 NA non-coding downstream 103043 643982 ~ 651464 (-)
CI01000068_00582352_00600267 NA non-coding downstream 148461 582054 ~ 601519 (-)
G273147 NA non-coding downstream 291859 456069 ~ 456305 (-)
G273192 NA non-coding upstream 32388 787461 ~ 787662 (-)
G273042 NA non-coding upstream 195489 950562 ~ 952947 (-)
G273032 NA non-coding upstream 241779 996852 ~ 999620 (-)

Expression


Co-expression Network