XLOC_010464 (ncalda)



Basic Information


Item Value
gene id XLOC_010464
gene name ncalda
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 9833256 ~ 9897769 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00020547
GAGCAGAAGACAACGTTTTCAGCTTGTTTCAGTACAGTTATAGTTTCGTTCTCTGCTGTTGCGTTGGACCCTACttctgttttgttcatttgtttacacCAGCCGCCTGCAGAAAGTTTGTCAACgtgAAAATCTTTAGACAGAGCCTGGTCAACTGGTCAAGCCTGTGGATTTCCTCTGGCACTAGTGCTGTCTTGTGAAACGAAACCATGGGGAAACAGAACAGCAAGCTCCGGCCTGAGGTGATGCAAGACCTGTTAGAGAGCACAGACTTTACAGAGCACGAGATCCAGGAATGGTACAAAGGCTTTCTAAGGGACTGTCCCAGTGGCAACCTCTCAATGGAGGAGTTTAAGAAAATCTATGGAAACTTCTTTCCTTATGGAGATGCCTCAAAGTTTGCAGAGCACGTTTTCCGTACGTTTGATGCAAACGGCGATGGTACCATTGACTTTCGGGAGTTCATAATTGCATTGAGCGTCACGTCACGAGGAAAACTGGAACAGAAGCTTAAGTGGGCTTTTAGTATGTATGATCTGGATGGAAACGGCTACATCAGCAAATCAGAGATGCTTGAGATTGTGCAGGCTATTTACAAGATGGTGTCATCAGTGATGAAGATGCCAGAGGATGAGTCCACACCTGAGAAGAGAACAGAAAAGATCTTCCGACAAATGGACACCAATCGGGATGGAAAACTGTCTCTGGAGGAGTTTATCAAAGGCGCAAAGAGTGACCCATCCATTGTTCGTCTGCTACAGTGTGATCCCAGCAGTGCAGGACAGTTCTGAGATCAGCGTCTCGTTCTtcaaccttttatttatttattggttttaattttgtttttgagagTCACTCCTTCTGCTTGCAGGGAAATGATGCagggtcctttttttttttttttttttttttttttttttctttcttttcagaaTATGGCATCTGGGTCTCATCAAACTGAGTTTGGCCAGAAATAgtaacacacatacgcacacacagagTTATTGGCCATGTTGTCTCAGCAGGGAGCCGTACCAGGTCTGAAAGAGGCATGTGATGGAGTGAACTAGAGCTGAAATCTGAGCTGAATTAATTTCCTGATAAGACAACAGGTTTTAGATCTTGTTAGGAATACTATCTGGGTACTAGAGCTGTGACAGTTTAAGCTTGACCAACACATGAATATAATATAAGATTGGAAATCATTCTTGAACAGTAGTGGAATCGCTTTTGTCTCTACAAACACCTCAGCATTGGTTATGTCTAAGTATTTGAGGTCGTTTTTCAATTTCAGATTGTGTATCTCAAATCAATGGTTATGCCAACGTCATAATTGGCAGATCACAGTACAGTTCTCCTAAGGGACCAATACGTCAGGCATGCAGAATTCCAGTTGTACACTGACGATTCCCCACATTGTGCTCAATCTAAAGAGCCTTGTCATTTATGCTGAAAACGAACATCAGATTTTGATTCATTCGGTTTTAGTCTACTGTTTGGAAAAACATGAACGTTTTCTAATATTTGTATTCTGGTAACGGTAAGCTTGTATATAAATCTAAAAGCATCAGACACGCATGCGAAACTCTACTCATCTTAGGATGCAGCGATTGGTTTTATTGATGTTTTGAACAAAAGCATGCGACAGCGAGTTTATCTTCATTGGTAGACAGGAGAGTATTTGTGTAATTTGTAtgcatgtgttgtgtgtgtgtgtgtgtattcggtTAATATCAGTTACAGCCTGGTTCGCTCACCCTGGTTCTAGATGTTGTGATGCATTGTTCGCATTTTACCGAAGGTTTGTGTTGTTGGAAAAACAACTAAAGCTTTATTGATTTAAAGGTTTCTACGATCACGTTTATCTGCTATACAGCCGGTCTTTAACTCCTGATTGTACACGTGTGCATCATCACGTTACTGAATTGCCTTATACTGTACACACTGAAGTGTTTCTGGGGATGAGTGAGATTTATATGCCTTTTTCAAATTAAGCTGAAGCTCTTCTCATTCACTCATTGGGCAGATGTCGTTTTGTCGAGAGCATCTTGCTTCTAATATTAACCTGGCATACTAAATTGTACTTTCGGTTAGGATCTCATGTCATAGAACGAGTTTTTCCACTCATGCGGTATCCATTGCACTTGCAGCATGTACTGATTAAACAACGGGTGGAGAGCATTTATTCAGAACTCCTAACAGTTCCTATAGCACCCTCTGCCCTGCTTTTAGTGATCGCGCTGAAACCACGGAAAGCCACGCTTCTGCTTCTCATGTTCTTGAATTTCCCTGTGAACGTTAAATGCCTCACCACAGTGCATTCAATTCTGCTATACTGTTAATGAACTTGTTTGAATGATTTGTTTTTGACTCATTGAACAACTGctgttttttgtaaaaaatgtcgagtaaaaaaaagttaatgcagCAGATCAAACTGCTttgttatttcatgttttatgtgAATTTTATGTCGTTTTTCcattttgttttccatttttaacATCTGACGTAACATTTCTGTATCACCGATATATCATGTGGGCAGGTGCCAAAAATATAAAAGCAGTATTGTAtaaatttatactgtaaaaaatattctttGTCAAACTACTTGTTTGTAATTGTTGCATTTTGTAGATTTTGTATGGTAATCTGTATTTTGTGACTGTAGATTTGAGACATGAAAAAATTGTTTTGGTTATAATATTGAGCAGAGATTAAATC
>TCONS_00020548
AATTTTAGACATCGAGTGGGACTGTACTGTGCCGGTCCTTTCTACAGTTGTTTTAGTGCTGTCTTGTGAAACGAAACCATGGGGAAACAGAACAGCAAGCTCCGGCCTGAGGTGATGCAAGACCTGTTAGAGAGCACAGACTTTACAGAGCACGAGATCCAGGAATGGTACAAAGGCTTTCTAAGGGACTGTCCCAGTGGCAACCTCTCAATGGAGGAGTTTAAGAAAATCTATGGAAACTTCTTTCCTTATGGAGATGCCTCAAAGTTTGCAGAGCACGTTTTCCGTACGTTTGATGCAAACGGCGATGGTACCATTGACTTTCGGGAGTTCATAATTGCATTGAGCGTCACGTCACGAGGAAAACTGGAACAGAAGCTTAAGTGGGCTTTTAGTATGTATGATCTGGATGGAAACGGCTACATCAGCAAATCAGAGATGCTTGAGATTGTGCAGGCTATTTACAAGATGGTGTCATCAGTGATGAAGATGCCAGAGGATGAGTCCACACCTGAGAAGAGAACAGAAAAGATCTTCCGACAAATGGACACCAATCGGGATGGAAAACTGTCTCTGGAGGAGTTTATCAAAGGCGCAAAGAGTGACCCATCCATTGTTCGTCTGCTACAGTGTGATCCCAGCAGTGCAGGACAGTTCTGAGATCAGCGTCTCGTTCTtcaaccttttatttatttattggttttaattttgtttttgagagTCACTCCTTCTGCTTGCAGGGAAATGATGCagggtcctttttttttttttttttttttttttttttttctttcttttcagaaTATGGCATCTGGGTCTCATCAAACTGAGTTTGGCCAGA
>TCONS_00020549
GAAGAATCTTGAGTACTTGTTGAATTGACACGGTTATTCTTGTTCTCTGTGATCTCTGTACTTGGTCTTTTAAAACTCCCATCATCGTCAGCTATAAACTGCTGGGTTATGGACTGTTGAAGGCAGTGGATTGCAggggaaaatagaaaaaaaagagtaaaagagAGTGCTGTCTTGTGAAACGAAACCATGGGGAAACAGAACAGCAAGCTCCGGCCTGAGGTGATGCAAGACCTGTTAGAGAGCACAGACTTTACAGAGCACGAGATCCAGGAATGGTACAAAGGCTTTCTAAGGGACTGTCCCAGTGGCAACCTCTCAATGGAGGAGTTTAAGAAAATCTATGGAAACTTCTTTCCTTATGGAGATGCCTCAAAGTTTGCAGAGCACGTTTTCCGTACGTTTGATGCAAACGGCGATGGTACCATTGACTTTCGGGAGTTCATAATTGCATTGAGCGTCACGTCACGAGGAAAACTGGAACAGAAGCTTAAGTGGGCTTTTAGTATGTATGATCTGGATGGAAACGGCTACATCAGCAAATCAGAGATGCTTGAGATTGTGCAGGCTATTTACAAGATGGTGTCATCAGTGATGAAGATGCCAGAGGATGAGTCCACACCTGAGAAGAGAACAGAAAAGATCTTCCGACAAATGGACACCAATCGGGATGGAAAACTGTCTCTGGAGGAGTTTATCAAAGGCGCAAAGAGTGACCCATCCATTGTTCGTCTGCTACAGTGTGATCCCAGCAGTGCAGGACAGTTCTGAGATCAGCGTCTCGTTCTtcaaccttttatttatttattggttttaattttgtttttgagagTCACTCCTTCTGCTTGCAGGGAAATGATGCagggtcctttttttttt
>TCONS_00020550
ataaaaacaaaaccaacaactacaaactaaaaccataaaaataaaaagaatgactAGTATTTGCTTTGATATTCTTAACTGCAGCCGTGAAGGAAGGCGTGCCGTGATGATGACGCCATCAAGCATATCTCGTGCCACGTTCCCCATACGGCGCGAGAGCAGAAGACAACGTTTTCAGCTTGTTTCAGTACAGTTATAGTTTCGTTCTCTGCTGTTGCGTTGGACCCTACttctgttttgttcatttgtttacacCAGCCGCCTGCAGAAAGTTTGTCAACTGCTGTCTTGTGAAACGAAACCATGGGGAAACAGAACAGCAAGCTCCGGCCTGAGGTGATGCAAGACCTGTTAGAGAGCACAGACTTTACAGAGCACGAGATCCAGGAATGGTACAAAGGCTTTCTAAGGGACTGTCCCAGTGGCAACCTCTCAATGGAGGAGTTTAAGAAAATCTATGGAAACTTCTTTCCTTATGGAGATGCCTCAAAGTTTGCAGAGCACGTTTTCCGTACGTTTGATGCAAACGGCGATGGTACCATTGACTTTCGGGAGTTCATAATTGCATTGAGCGTCACGTCACGAGGAAAACTGGAACAGAAGCTTAAGTGGGCTTTTAGTATGTATGATCTGGATGGAAACGGCTACATCAGCAAATCAGAGATGCTTGAGATTGTGCAGGCTATTTACAAGATGGTGTCATCAGTGATGAAGATGCCAGAGGATGAGTCCACACCTGAGAAGAGAACAGAAAAGATCTTCCGACAAATGGACACCAATCGGGATGGAAAACTGTCTCTGGAGGAGTTTATCAAAGGCGCAAAGAGTGACCCATCCATTGTTCGTCTGCTACAGTGTGATCCCAGCAGTGCAGGACAGTTCTGA

Function


symbol description
ncalda Predicted to enable calcium ion binding activity. Orthologous to human NCALD (neurocalcin delta).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-28 Predicted to enable calcium ion binding activity. Orthologous to human NCALD (neurocalcin delta).

Ensembl:

ensembl_id ENSDARG00000070688

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00020547 False 2727 mRNA 0.39 5 9833256 9897613
TCONS_00020548 False 841 mRNA 0.43 4 9835011 9879407
TCONS_00020549 False 879 mRNA 0.44 4 9835084 9869056
TCONS_00020550 True 885 mRNA 0.45 4 9835192 9897769
Loading

Neighbor


gene id symbol gene type direction distance location
XLOC_010463 grhl2a coding downstream 2805 9807263 ~ 9830451 (-)
XLOC_010462 tapbpl coding downstream 30258 9787383 ~ 9802998 (-)
XLOC_010461 NA coding downstream 71503 9759176 ~ 9761753 (-)
XLOC_010460 COLEC10 coding downstream 138434 9680908 ~ 9694822 (-)
XLOC_010459 mal2 coding downstream 157274 9672126 ~ 9675982 (-)
XLOC_010465 id4 coding upstream 80089 9977858 ~ 9980402 (-)
XLOC_010466 NA coding upstream 115216 10012985 ~ 10013605 (-)
XLOC_010467 cep76 coding upstream 128127 10025896 ~ 10053049 (-)
XLOC_010468 ptpn2a coding upstream 157723 10055492 ~ 10071887 (-)
XLOC_010469 cep192 coding upstream 199353 10097122 ~ 10261652 (-)
XLOC_010626 CR392024.2 misc upstream 10997343 20895112 ~ 20895175 (-)
XLOC_010458 FO704756.1 non-coding downstream 266885 9564503 ~ 9566371 (-)
XLOC_010455 CR394537.1 non-coding downstream 531062 9302079 ~ 9302194 (-)
XLOC_010452 NA non-coding downstream 1153794 8668981 ~ 8679462 (-)
XLOC_010450 CU062417.1 non-coding downstream 1354247 8478880 ~ 8479009 (-)
XLOC_010472 NA non-coding upstream 523401 10421170 ~ 10429893 (-)
XLOC_010473 NA non-coding upstream 527978 10425747 ~ 10428540 (-)
XLOC_010477 NA non-coding upstream 951937 10849706 ~ 10859614 (-)
XLOC_010478 CU468227.1 non-coding upstream 1018521 10916290 ~ 10916404 (-)

Expression


Expression of XLOC_010464(ncalda) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Expression of XLOC_010464(ncalda) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_09410080_09416286 NCALDA, NCALDB, HPCAL1, NCALD.L, NCALD coding CI01000016 null 9409906 ~ 9417767 (-)