G273028


Basic Information

Item Value
gene id G273028
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000068
NCBI id null
chromosome length 1053214
location 44476 ~ 45515 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU309845
CACTGTATAGAGCTTTATTTGAGCACAAACAAACAAAACAAACTACATTCAAAACAAACATGTTCTTAAAGTGCTGGAAGAATTTCTCACACACAATCTGACACAAAAAATACAATTAAAAGAACCATATTCCCCAAAAAAGAATGAACCATTACACAAAATTAATATTTTATAATAACCTTTCTGTATAGACGACAACTCTTGAATAAACTGAAGAAGAATATTTAGCATTGTCCTGGACTGTATGATAAAATAAAAGCTCAGGTGTTTATGGGCATCAGTAGTATTTGTGTGGCGTAAAGGAGGTAGCAATTCATATAATAACAGCTGACTGCTCGACCAACTTAAAAACATACAAATTAATCCGCATGTACCTGCCAAACTAACCGAATAAAGTTGTTCGTGGGCGTCTGATAATAAACCACACACATATATATTCCAACAAACTTAAGGCACACAAACCCTAATCCTCTAAAAATGAGTTTAAAATGTGCTCTAAAAATGAGATTTAAACATGAATTTTGCTTTGGTTGCCGTAGAGAGGCCTTTCTGCATATTATGGGCTGTTACGGATTTCCATATGTCTCTTATGTAATAAAGCAATGAGGCGCTCTCAATGTAAATAGAACAGCACGTGTATTTCAGTATTATGTGATCTGAACGCCCACAGCGCATCTGTTCCTACATCATACATGAAGACACACGCATACCGCTTTACCTTTACAACATTCTGCTGGTTATGAGATCAGAAGGAAGACATTAACATACAGTGAATAAATCAGTGATGTTGATTCAGATAAAACATAATCAGGAGTCAAATCAGATCTTATAACAGACATGGACTGACTTTGAAGAGTAACAGATATTAAACACAAATGGTGACGATTGTGCATAATTTTAAAACAGACTTGAACTAAATCTATAACCTCTTAGCTAAAATAATGATAATTACAGTAGCTAAAAGGATGTGTTAAAGGATTAGTTCACTTCAGAATTCAAATTTCCTTATAATTTACTCACCCCCATGTCATCCAAGATGT

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU309845 True 1040 lncRNA 0.34 1 44476 45515

Neighbor

gene id symbol gene type direction distance location
CI01000068_00022331_00025614 FGFR1OP2 coding downstream 17946 22147 ~ 26530 (-)
CI01000068_00002352_00004092 MED21 coding downstream 40384 2111 ~ 4092 (-)
CI01000068_00077325_00088188 SCAF11 coding upstream 31156 76671 ~ 88212 (-)
CI01000068_00093823_00101443 SLC38A2 coding upstream 47161 92676 ~ 101959 (-)
CI01000068_00121327_00131615 NA coding upstream 73560 119075 ~ 131615 (-)
CI01000068_00174820_00180047 NA coding upstream 128034 173549 ~ 180047 (-)
CI01000068_00236826_00238310 CHRM2, CHRM2A coding upstream 190654 236169 ~ 239165 (-)
G273041 NA non-coding downstream 29812 11908 ~ 14664 (-)
G273031 NA non-coding upstream 827 46342 ~ 47552 (-)
G273070 NA non-coding upstream 67326 112841 ~ 113065 (-)
G273074 NA non-coding upstream 69988 115503 ~ 115764 (-)
G273089 NA non-coding upstream 141884 187399 ~ 187602 (-)
G273050 NA non-coding upstream 246415 291930 ~ 309104 (-)
CI01000068_00582352_00600267 NA other upstream 551693 582054 ~ 601519 (-)
CI01000068_00663458_00672380 DPYSL5B, DPYSL5 other upstream 616689 662204 ~ 672380 (-)

Expression


Co-expression Network