Gene
RNA
| Item | Value |
|---|---|
| gene id | G273144 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000068 |
| NCBI id | null |
| chromosome length | 1053214 |
| location | 452331 ~ 452563 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU309965 | True | 233 | lncRNA | 0.39 | 1 | 452331 | 452563 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000068_00449335_00450163 | NA | coding | downstream | 2168 | 449335 ~ 450163 (-) |
| CI01000068_00442295_00444826 | NA | coding | downstream | 7505 | 441650 ~ 444826 (-) |
| CI01000068_00423240_00429403 | PROSER2 | coding | downstream | 21711 | 422701 ~ 430620 (-) |
| CI01000068_00236826_00238310 | CHRM2, CHRM2A | coding | downstream | 213166 | 236169 ~ 239165 (-) |
| CI01000068_00174820_00180047 | NA | coding | downstream | 272284 | 173549 ~ 180047 (-) |
| CI01000068_00466560_00470556 | NA | coding | upstream | 13244 | 465807 ~ 470556 (-) |
| CI01000068_00478512_00488030 | XPOT | coding | upstream | 24484 | 477047 ~ 488902 (-) |
| CI01000068_00496537_00503427 | NA | coding | upstream | 43716 | 496279 ~ 503427 (-) |
| CI01000068_00582352_00600267 | NA | coding | upstream | 129491 | 582054 ~ 601519 (-) |
| CI01000068_00603672_00617563 | TULP4A, TULP4 | coding | upstream | 150141 | 602704 ~ 617563 (-) |
| G273141 | NA | non-coding | downstream | 10744 | 441367 ~ 441587 (-) |
| G273129 | NA | non-coding | downstream | 95658 | 356471 ~ 356673 (-) |
| G273121 | NA | non-coding | downstream | 109310 | 342679 ~ 343021 (-) |
| G273115 | NA | non-coding | downstream | 129382 | 322634 ~ 322949 (-) |
| G273114 | NA | non-coding | downstream | 132115 | 319900 ~ 320216 (-) |
| G273145 | NA | non-coding | upstream | 400 | 452963 ~ 453297 (-) |
| G273146 | NA | non-coding | upstream | 1169 | 453732 ~ 454079 (-) |
| G273147 | NA | non-coding | upstream | 3506 | 456069 ~ 456305 (-) |
| CI01000068_00644494_00651464 | NA | non-coding | upstream | 191442 | 643982 ~ 651464 (-) |
| CI01000068_00663458_00672380 | DPYSL5B, DPYSL5 | other | upstream | 209641 | 662204 ~ 672380 (-) |
