XLOC_010470 (flot1b)


Basic Information

Item Value
gene id XLOC_010470
gene name flot1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10287588 ~ 10316359 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020560
ACTGCGTAATTACGGCGAGTTTTCTTTACCATTGACACAACTTAAACAATCCGAGTCGCATTTCGAGATACTTCGCTTTTAACGAAATATCTGCAATCGATCTAATTAAGGATGTTTTACACCTGTGGTCCCAATGAGGCGATGGTGGTTTCAGGATGTGGCCGCGCTCCTCCTCTCATGATTgctggtggaagagtgtttgttATTCCTTGCATTCAGCAAATCCAGAGGATCACTCTCAATACTCTGACTCTGAATGTGAAGAGTGACAAGGTCTACACCAGACACGGTGTCCCAATCTCAGTGACTGGCATTGCCCAGGTGAAGATCCAGGGTCAGAATAAAGAAATGCTGGCCGCCGCTTGTCAGATGTTCATGGGCAAGTCCGAGGGTGAGATTGCTAATATTGCCCTGGAGACCCTTGAGGGACATCAGAGAGCCATTATCGCCCACCTGACTGTGGAGGAGATCTACCAGGACCGTAAAAAGTTCTCAGAGCAGGTCTTTAAGGTGGCTTCCTCTGACCTGGTCAACATGGGGATTGGTGTTGTCAGTTACACACTCAAAGATGTGCATGACGATCAGGATTATCTAAGCTCTCTGGGTAAAGCTCGTACTGCTCAAGTGCAAAGAGACGCTCGTATCGGTGAAGCTCAGTTCAAGAGAGATGCCGTCATCagggaAGCTCACGCCATGCAGGAAAAGGTCTCTGCTCAGTATAAGAATGAGATCGAGATGGCTAAGGCTCAGAGAGACTTTGAGCTGAAGAAAGCTGCCTATGATGTTGAGGTCAACACCAAGAAGGCCGAGTCTGAAATGGCCTATCAACTTCAGGTGGCTAAGACCAAGCAGCGTATTGAGGAGGAGAAGATGCAGGTTCAGGTTGTGGAGCGAACGCAGCAGATCATGCTTCAGGAGCAGGAGATCACCCGCAGAGAGAAGGAACTGGAGGCCAAGATCCGCAAACCAGCCGAGGCTGAGAGATACCGCATTGAGAAGCTCGCCGAAGCAGAACGGCTTCAGTTGATCATGGAGGCGGAAGCTGAGGCAGAGTCCATAAGAATGAAGGGAGAGGCCGAGGCCTTTGCACTGGAGGCGAAGGGTCGGGCTGAAGCTGAACAGATGGCTAAGAAGGCAGAAGCCTTTAAAGGGTACAAAGAAGGAGCCATGGTGGACATGCTGCTGGAGAAACTGCCACTGATGGCAGAGGAGATCAGCAAGCCGCTCTGTGCCGCCCAGAAGGTCACCATGGTGTCGAGTGGTGGGTCAGAAGTGGGTGCTGCCAAGCTGACAGGAGAAGTTCTGGATATCATGACTCGCCTGCCAGGCGCTGTGGAGAAACTGACTGGAGTCAATATCTCACAGGCTGGTTTAACCCGCATGGGttaatgaagatgatgatgaaggaaGCGGCTCTGATCCTGCATCTCCGCTCCTCTCGTCTGTTAGCATGTTTGCATGCCTGTTCTCCTACTGAAGCTGGAACATTTGAGGTCATGCTTTGCTTTTATATTCCACCAGTTACCTTCAgtttttatattgtgttttgtgaattgcattattttGTCATACAGTAGTATAATGATCCTTTATATCACAGGTGTCACATCCAGTTTgcggagggccacagctctgcacagtttatttccacccctaattaaacacacttgataaAACGAATTGAGTCCTTCAGTTTTGTTAAGAGACCGGCAGGTAATTTTGTGAAagcggggttggaactaaactgtgcagagctgcagcccgtCAGGAACTGGATTTAACCCCTGTACTTTATATGAAGTTAGGTGAACTACATTGAATATTCAGGGAAGCAGGGCTGCATTTTTCCTttccttttgaaagttttctgtaTTTCTAACTGTTAGAGCCACACAGGCCTGTTGAGTCCGGTTCAGTTTTTCTCCAAACCAAAGCGCGTTTCAGACAAATGCAGATATATAGATTTATATTCACCTCAAGTGCATTACTGAAGTCATACTCATGTTTAACTTGCATATCTTAATAAACTGCAATGTGTTTATGTGTTCTTGCCATTTTAAAACGGAAAAGTTTGCTTAAGGTGTCTTTTTAAAATATGGCACAATAACTCGTGATCCTACAGTCTGTGAAGGATTTTCCTGACACTACAGGTAAAAGAGAACTCGCTGATGTTGGACTATAttgaatttgtattatttttttaaatgggccAGTGTGTTTCAGCAAAGTTTAGTAAGTAGGGGTGGATTGAGAAGTTTGTTACCAATGGAAAAGGATGTGACAATAGGTTTGGTTTTGAACACGGCCCACAAAAACTGGTAAAGAGTGAAGGTGGTTTTATTTCTCACTTCTTTTGTTGCAAAAATGCATTTAGTCTTTTACCGTGTTAGATGTTAGTTTGTTTTTACCATGCTGCTGTTTACTTCACACTAAAATCTAATTAACGTTAACAGGTAAACCAATAGTTCTTCAGTTAAAAGTGTTTTACTTCCTCATAGACTGACACTGAGTTCGGCctgcttttttctttctctctcgtgTTTCAGTAACTGCGGCATGTCATGTGAAACTTCCTTGCCTTAATGACTAATTACCTTCAGCACTCTGCCGTCAGTTtgcttttactacagtaaatccTCTTTTGCTGTCGTTTTTTACTCAACAGATTAACTCCGTATTGCCTTACTGTATGTTCATTGGTGATGTAGATGTTTTCACCTTAAACTGTAGATCTCTATATCAAGACTGAATGTAGATTCATATATGTGATTCTATAAGTATGTACCCTTTAATATGAACAATAAACTGTTAGCGTCTGCTGTACATTAAAA

Function

symbol description
flot1b Predicted to be involved in several processes, including positive regulation of cell-cell adhesion mediated by cadherin; protein kinase C signaling; and regulation of endocytosis. Predicted to be located in endosome and membrane. Predicted to be part of flotillin complex. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in several structures, including brain; musculature system; paraxial mesoderm; pectoral fin; and pharynx. Orthologous to human FLOT1 (flotillin 1).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0070528 protein kinase C signaling biological_process
GO:0045807 positive regulation of endocytosis biological_process
GO:0002090 regulation of receptor internalization biological_process
GO:1901890 positive regulation of cell junction assembly biological_process
GO:2000049 positive regulation of cell-cell adhesion mediated by cadherin biological_process
GO:0005768 endosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016600 flotillin complex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-020430-2 Predicted to be involved in several processes, including positive regulation of cell-cell adhesion mediated by cadherin; protein kinase C signaling; and regulation of endocytosis. Predicted to be located in endosome and membrane. Predicted to be part of flotillin complex. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in several structures, including brain; musculature system; paraxial mesoderm; pectoral fin; and pharynx. Orthologous to human FLOT1 (flotillin 1).

Ensembl:

ensembl_id ENSDARG00000037998

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020560 True 2831 mRNA 0.44 13 10287588 10316359

Neighbor

gene id symbol gene type direction distance location
XLOC_010469 cep192 coding downstream 25936 10097122 ~ 10261652 (-)
XLOC_010468 ptpn2a coding downstream 215701 10055492 ~ 10071887 (-)
XLOC_010467 cep76 coding downstream 234539 10025896 ~ 10053049 (-)
XLOC_010466 NA coding downstream 273983 10012985 ~ 10013605 (-)
XLOC_010465 id4 coding downstream 307186 9977858 ~ 9980402 (-)
XLOC_010471 si:ch73-54f23.4 coding upstream 81081 10397440 ~ 10404383 (-)
XLOC_010472 NA coding upstream 104811 10421170 ~ 10429893 (-)
XLOC_010473 NA coding upstream 109388 10425747 ~ 10428540 (-)
XLOC_010474 abhd16a coding upstream 161174 10477533 ~ 10516970 (-)
XLOC_010475 g6fl coding upstream 206237 10522596 ~ 10547781 (-)
XLOC_010626 CR392024.2 misc upstream 10578753 20895112 ~ 20895175 (-)
XLOC_010461 NA non-coding downstream 525835 9759176 ~ 9761753 (-)
XLOC_010458 FO704756.1 non-coding downstream 721217 9564503 ~ 9566371 (-)
XLOC_010455 CR394537.1 non-coding downstream 985394 9302079 ~ 9302194 (-)
XLOC_010452 NA non-coding downstream 1608126 8668981 ~ 8679462 (-)
XLOC_010477 NA non-coding upstream 533347 10849706 ~ 10859614 (-)
XLOC_010478 CU468227.1 non-coding upstream 599931 10916290 ~ 10916404 (-)
XLOC_010479 NA non-coding upstream 601225 10917584 ~ 10919434 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_04181435_04188590 FLOT1B, FLOT1, FLOT1A coding CI01000016 null 4181263 ~ 4188590 (-)
bowfin (Amia calva) AMCG00006433 NA coding CM030134.1 CM030134.1 4351652 ~ 4360196 (+)