XLOC_010472


Basic Information

Item Value
gene id XLOC_010472
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10421170 ~ 10429893 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022119
CAAAACCATCTGATGTAAACCATTGGAAATAAGCAGCTGAGGTGAAGTGCTGTGAAGACTGTGCTCTGGCAGTTGGTGTTAAACAGTGAAGCAAAAGGCCGTCCGGTCAGATGTCTGTGACATCTCTGCTCCAAACCCACATCAGAGAGTGCCTGTGGAGGCGAGCCCCTGAAAAAACAGTCATGACACTGAAGGAAGCCTGGATCGAGATCTGCGTGGGAACTTGCCCGGACTACACCACCATTAACCAGCACTGCAGAGATCAACAACACAGTGAGTCTGGAATGAGTCTGGGCACAATCTCACCTTCTTCATCCCTCCCCCTTTCACTCCCTTTCATCCATCCCTCCCTTTCCAAATCACTCTTGCTGACTACACCTCGGTTCAGTATTGCTATAATGCACACAAACCAGAACACACACCTCTCGCACGCCTTCATGACTACCTGTGTATCAGCATTCCCCAGCCTTCACAATAGCAAACttgctttttttttgcagctagtcattttttatctttgcttggctttttttccccaagtaataaaaaaaaaaaaatatttgagtttTTCCATAAATCGGAGATTATGCTTGACATCTGATGTACTTACTAAAAAGAAGACAGAAACACAGGggatatattttaaacatttaatataaaaaaacaataaacaacaaaaatgatcatgttttgCTTGTAGTTTTTCTCGGCACCTATGTGAAAGAAAAGGAAACAGAATTTAATAGCATTTCATAAGCAATTGTGTTATTATTAAACTGATACAGATACACTGTACTGTCTAATTCAGATTcaccaggtgtgtgtgtgcttaatgATCCCTCAGAAACTTGCCTGGACTAGTGTTGATGTGCTCCTGGGTAATATGGGTGTGGCTTTCtcaatctgtctgtttttcttcTTTGTTCTGCTCACTCAGTCTTTCTTAATGCTGTCGCACAACTCTATATTTAAAGTATGCTTGGGGAACATATTGCAGCTCTGCAGTCTTTAAAGAATGAGCCTATCCATTATCTACAGTGAGTCAGGTGTTTTTAGTAACTCAATATGTAATACAAACAAACGCCAATGCCAGCATAACAGCACAAGTGCAGATTTCTTCATGATGAGTCACTAAATCGTTTTTTACCTGGTTTATTTCCAATTTCCAACTAATAAAAGTGCTTGCATATCGCAAAGGATCTGAATGATCTAagaatatcatatttaaaaaggcCCAACAATAGCATGTTGGCAGGACAATAAGACAAAAATATCTAATTAAAGATAAAAAGTGTTATTGTCCTGCCATTTTAtgctaaaaatgttaaattattattattattattatcagaaaTTTATGTTATAGGTTCatgagtctctttttttaatcctacatttacattatataaaacGTTAATTTTCTTCAAATTTTTCTACTTTGATTTTTCCCCGTTCAAATACAATCATAATGCAACTACACACATACACCAACCGTacagtatttgtatttatatttcatGTTCTTGTTTGGTTGTTTCAAATGTCATATGCCATtaccatcacagaaataaattgaattataaaatatatttacattatttgaaacaaatttaggGCCCTAAtttaggcgcaaagtctaaagtgcatggcgcaaaagcattaagggcgtgtccgaatcctcttatgctattttaaagacagaaaaatacagtttgcTCCCTGTTGTAAGAtctaacagtgttgtgcttattctcttaagtTATGGgatgtgttttgagtataacatgcaataaaccaatcagagtctcatctcccataccctttaagagtcagttgcgccgcaccatggcacatttgctattcacatgtaagtggaaaaactgaacgctttactagtggaaaaaaacagttaaacagaccatctatgtgaggataaagaacgagcctcctccatttg
>TCONS_00022120
ATGCCGTAAAACAACATACACTGTCGTAAAACGCATTCGTCTGACGCAATAACAGAAGAACGTGCCTGATAAACAAAACCATCTGATGTAAACCATTGGAAATAAGCAGCTGAGGTGAAGTGCTGTGAAGACTGTGCTCTGGCAGTTGGTGTTAAACAGTGAAGCAAAAGGCCGTCCGGTCAGATGTCTGTGACATCTCTGCTCCAAACCCACATCAGAGAGTGCCTGTGGAGGCGAGCCCCTGAAAAAACAGTCATGACACTGAAGGAAGCCTGGATCGAGATCTGCGTGGGAACTTGCCCGGACTACACCACCATTAACCAGCACTGCAGAGATCAACAACACAAATGAGTCTGGGCACAATCTCACCTTCTTCATCCCTCCCCCTTTCACTCCCTTTCATCCATCCCTCCCTTTCCAAATCACTCTTGCTGACTACACCTCGGTTCAGTATTGCTATAATGCACACAAACCAGAACACACACCTCTCGCACGCCTTCATGACTACCTGTGTATCAGCATTCCCCAGCCTTCACAATAGCAAACttgctttttttttgcagctagtcattttttatctttgcttggctttttttccccaagtaataaaaaaaaaaaaatatttgagtttTTCCATAAATCGGAGATTATGCTTGACATCTGATGTACTTACTAAAAAGAAGACAGAAACACAGGggatatattttaaacatttaatataaaaaaacaataaacaacaaaaatgatcatgttttgCTTGTAGTTTTTCTCGGCACCTATGTGAAAGAAAAGGAAACAGAATTTAATAGCATTTCATAAGCAATTGTGTTATTATTAAACTGATACAGATACACTGTACTGTCTAATTCAGATTcaccaggtgtgtgtgtgcttaatgATCCCTCAGAAACTTGCCTGGACTAGTGTTGATGTGCTCCTGGGTAATATGGGTGTGGCTTTCtcaatctgtctgtttttcttcTTTGTTCTGCTCACTCAGTCTTTCTTAATGCTGTCGCACAACTCTATATTTAAAGTATGCTTGGGGAACATATTGCAGCTCTGCAGTCTTTAAAGAATGAGCCTATCCATTATCTACAGTGAGTCAGGTGTTTTTAGTAACTCAATATGTAATACAAACAAACGCCAATGCCAGCATAACAGCACAAGTGCAGATTTCTTCATGATGAGTCACTAAATCGTTTTTTACCTGGTTTATTTCCAATTTCCAACTAATAAAAGTGCTTGCATATCGCAAAGGATCTGAATGATCTAagaatatcatatttaaaaaggcCCAACAATAGCATGTTGGCAGGACAATAAGACAAAAATATCTAATTAAAGATAAAAAGTGTTATTGTCCTGCCATTTTAtgctaaaaatgttaaattattattattattattatcagaaaTTTATGTTATAGGTTCatgagtctctttttttaatcctacatttacattatataaaacGTTAATTTTCTTCAAATTTTTCTACTTTGATTTTTCCCCGTTCAAATACAATCATAATGCAACTACACACATACACCAACCGTacagtatttgtatttatatttcatGTTCTTGTTTGGTTGTTTCAAATGTCATATGCCATtaccatcacagaaataaattgaattataaaatatatttacattatttgaaacaaatttaggGCCCTAAtttaggcgcaaagtctaaagtgcatggcgcaaaagcattaagggcgtgtccgaatcctcttatgctattttaaagacagaaaaatacagtttgcTCCCTGTTGTAAGAtctaacagtgttgtgcttattctcttaagtTATGGgatgtgttttgagtataacatgcaataaaccaatcagagtctcatctcccataccctttaagagtcagttgcgccgcaccatggcacatttgctattcacatgtaagtggaaaaactgaacgctttactagtggaaaaaaacagttaaacagaccatctatgtgaggataaagaacgagcctcctccatttg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022119 False 1957 lncRNA 0.37 3 10421170 10429820
TCONS_00022120 True 2020 lncRNA 0.37 3 10421170 10429893

Neighbor

gene id symbol gene type direction distance location
XLOC_010471 si:ch73-54f23.4 coding downstream 16787 10397440 ~ 10404383 (-)
XLOC_010470 flot1b coding downstream 104811 10287588 ~ 10316359 (-)
XLOC_010469 cep192 coding downstream 159518 10097122 ~ 10261652 (-)
XLOC_010468 ptpn2a coding downstream 349283 10055492 ~ 10071887 (-)
XLOC_010467 cep76 coding downstream 368121 10025896 ~ 10053049 (-)
XLOC_010474 abhd16a coding upstream 47640 10477533 ~ 10516970 (-)
XLOC_010475 g6fl coding upstream 92703 10522596 ~ 10547781 (-)
XLOC_010476 rabac1 coding upstream 398894 10828787 ~ 10837245 (-)
XLOC_010477 NA coding upstream 419813 10849706 ~ 10859614 (-)
XLOC_010478 CU468227.1 coding upstream 486397 10916290 ~ 10916404 (-)
XLOC_010626 CR392024.2 misc upstream 10465219 20895112 ~ 20895175 (-)
XLOC_010466 NA non-coding downstream 407565 10012985 ~ 10013605 (-)
XLOC_010461 NA non-coding downstream 659417 9759176 ~ 9761753 (-)
XLOC_010458 FO704756.1 non-coding downstream 854799 9564503 ~ 9566371 (-)
XLOC_010455 CR394537.1 non-coding downstream 1118976 9302079 ~ 9302194 (-)
XLOC_010452 NA non-coding downstream 1741708 8668981 ~ 8679462 (-)
XLOC_010479 NA non-coding upstream 487691 10917584 ~ 10919434 (-)
XLOC_010480 NA non-coding upstream 550159 10980052 ~ 11011652 (-)
XLOC_010482 BX005242.1 non-coding upstream 1007976 11437869 ~ 11538821 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location