CI01000069_00091982_00141515 (RHOT1, RHOT1A)


Basic Information

Item Value
gene id CI01000069_00091982_00141515
gene name RHOT1, RHOT1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 91674 ~ 142316 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_00091982_00141515.mRNA
CTATTAATAAGAGCACATATATTAGGAGCAGCTCAGAGTTAGTTGTTTTCTCCAGGAAGTGAACATGGGTTTTTTTTAGTAATTGAATGCTTGCGGAAGACCTCTCTTGTGAGTCCAGTGACCGCAGCGTTTTGCCGCGGCGAAGCGCACACGAGTTTCGAAACTGACGCGACCGGAGCGCAACAAGTTTAGGTGGCTGAATGAAGGTAAAATAACGTCGCGAACCCGCATCCTCCGGGATAAACTACGCTTAAAAAACATAATAGAGGTAAAACTACTACCTATATGTTTTTAAAAGCATTTCGCATATGGCAAATCGGGAAAAGAACAAGAAGACACTTCTAGAGTTGGTGAAGCTGCCAGAGAATAGCTGCTGTGCTGACTGTGGAGCTGCAGATCCAGACTGGGCTTCATATACACTGGGAATATTTGTGTGTCTTAACTGTTCTGGAACTCATCGCAATCTTCCTTCAATAAGTCGTATCAAGTCAATACGCTTAGACTTCTGGGATGATGAGCTTGTGCAGCCCCAACCAGATGATTGCGAGGTCCTTAGAGAACAATGGATTCGAGCCAAATACGAAAGAATGGAGTTTACAGAGAAAAATTCAGTAAGGCCCTACACAGCAGGTGTCTATGAGGGCATGCTGTGGAAGAAAGGAAAGGATAATGGACAGTTTCTCGAGAGGAAGTTTGTTCTTTCAGTGTGCGATTTTACCCTCAAATACTACAAGGAGGATGAATCTAAGGGGCCAAAGGCTGTTATCTCTGTGAAGGACCTGAATGCAACCTTCCAGCCTGAGAAGATAGGACATGTTCATGGCCTTCAGATCACCTACTGTGTGGATGATCACACCCGAAACCTTTTTGTTTACCATAAAAATGGGCAGGAGATTGTCAATTGGTTTAATGCCATTAGAGCTATTCGCCTCGTCTACCTGAAAACAGCCTTTCCTACAGCTAGTGACAGAGATGTTATGTTGGATCTCACAGTCCACTGGAAAGACCGCTTGGTGGAGGCCCATGAGTGTAAAAGGGAAAAATATCTGAAGCTGCTAATACCATGGATAACCAGAAACTATCTGAAAGAGGGTTACATGGAGAAAACTGGCCCTCTGCAGCGAGAGCCATTCAAGAAAAGATGGTTCATCTTGGACTCCCTGGACAGGAAACTGCTCTATTTTAAAACACAGCTGGATGCCATTGAGCTTGGGGTTGTTTTCATTGGCTCAGAGAATCATGGGTATTCAGTTAGAGAGTGTGTCCCTAAAGGGACAAGAGGCAACAAATGGAAGTGTGGGGTAATTGTGGAGACGCCGGATCGGCAGTTCGTCTTCATGTGCGAGCAGGAGCGCGATCAAAGAGAATGGGTGGAGGCCTTGAAAACAGTCATCTCGAAGCCTATGATGCCGCAAGATTACACCACCAAAGTGGGGAAGACCTCCCTGATCATGTCACTCGTCAGTGAGGAATTCCCTGATGAGGTTCCTCTCAGAGCTGAAGAGATCACTATTCCTGCTGATGTCACACCTGAGAGAGTGCCCACTCATATAGTGGACTACTCAGAAGCAGAACAGTCAGATGAGCAGCTTTACCAAGAGATATCAAAGGCTAATGTTATATGCATCGTATATTCAGTAAACAACAAGAAATCGATCGAAAAGGTGACAAGTCATTGGATTCCCCTCATCAATGAAAGAACGGATAAGGACAGCAGAGTACCATTGATCCTGGTGGGGAATAAATCTGACCTAGTGGAGCACAGCAGCATGGAGACCATCCTGCCCATCATGAACCAGTACTCTGAGATTGAGACCTGCGTGGAGTGTTCAGCCAAAAACCTGAAGAATATCTCAGAGTTGTTCTACTACGCCCAGAAGGCTGTTCTGCACCCAACAGGACCTTTGTACTCTCCAGAAGAGAAAGAGATGAAGCCATCTTGCATCAAAGCACTTACTCGCATTTTCAAAATATCAGACCTTGACAATGATGGCATTCTGAACGATAATGAGCTTAATTTCTTCCAGAGAACTTGTTTTAACATACCCCTGGCACCCCAAGCCCTGGAGGACGTGAAGAATGTTGTGCGGAAAAATATGTCAGATGGGGTGAAAGACAACGGCCTCACACTGAAGGGTTTCCTGTTCCTTCATACACTCTTCATTCAGAGGGGAAGGCACGAGACCACGTGGACTGTGCTCAGGAGGTTTGGTTATGATGATGATCTGGAGCTGACACAAGAATACCTGTTTCCACTGTTAAAAATACCCCCAGACTGTACCACAGAGCTGAACCACAACGCCTACCTCTTCCTCCAGAGCGTCTTTGACAAGCACGACAAGGATCGAGACTGTGCCCTGTCTCCAGATGAGCTGAAGGATTTGTTCAAGGTCTTTCCCTACATGCCCTGGGGTCCTGATGTCAACAACACGGTCTGCACCAATGAGCAGGGCTGGATCACTTACCAAGGCTACCTTTCCCAGTGGACGCTAACAACATACCTAGATGTGCAGCGATGTTTGGAGTACCTCGGTTATCTTGGTTACTCTATTATCCAAGAACAGGAGTCTCAGGCAGCCGCTATAACAGTCACCAGAAATAAGCGCATTGATCTGCAGAAGAAACAGACCCAGCGCAGTGTTTTCCGCTGCAATGTCCTAGGAGCTCGGGGCAGCGGTAAAAGTGGCTTTCTGCAGGGTTTCCTGGGCAGGAACCTTGTGCGTCAGAAGAAGATAAGGGAAGACCACAAGTCTTACTATGCCATTAGCACCACTTATGTTTATGGACAAGAGAAATATCTGCTCCTGCACGAGGTGCTGCCAGACTTTGAGTTCCTATCTGAGGCTGATCTGGCTTGTGATGTTGTTTGCCTGGTGTATGACATCAGCAACCCATGCTCCTTTGAGTACTGCGCTAAAGTCTACAAGAAACACTATATGGACAGCAAGACACCCTGTGTGATTATTTCTGCCAAGTCAGACCTGCATGAAGCACGTCAATACTACAGCCTGTCTCCGTTGGATTTCTGCCGGAAACACAAGCTTCACCCGCCACAGCTGTTCACCTGCAACACAGCCGAAGCACCCAGCAAAGACATCTACACCAAACTCACCACCATGGCTATGTATCCCCACGCCAAGTTACGCTGCATGTGCAGCTGCAACAGGTGTACCTTTTGCATCTGTCACAACCTCCTGAACTCTGAGCTGGTGCGCTCGGTAAAGGCCAAACTCTACAGCACAGTTCTGAACAGGTTGAGATCTTTTATACAAGATGCGGGCACGTTTCTGTTGGCTGACGAGGAGTCCGGCCTCACCCATCAGGTTCATGCAGTCAGCTTTGTAGAGGACTCTGTCTACATGGAGTCGTCTGTCGACCCATTTGTGCCCGTTTGTAACAGACACATGACCCAAGCTGACCTGAAAAACTCTACTTTTTGGCTGAGGGCGAGTGTCGGTGCCACCGTGTTTGCAGTTCTTGGCTTTGCCATGTACAAAGCTCTCCTCAAGCAGCGATTAAATAAGACCTTTTTACTACATTACAAGGACGGTATGAAATTCTTCCCAACTAACAATCATCTTACAAAACTAAGCATGAACATGTCAACTGGAATAGGAGTGCCACCTCCGCTCTGCCAGGGCTTTCTGAAGAAACGGAAAGACAAAATGGTTCAGTCTGTGCGGGAGGTGAACAGATCGGAGAACAATCGCTATCTATTTGAGATCACAATGAAAAATGGGAAGAAGAAAATGTTGGCTGCAGATACAGCTGATGTCAGGCAGGAGTGGATAGACCAGCTCTGGAAAGCCATGCTGCTCAACGGGCCTGACAGAACTGGATCTGTCTCCAATGGGTACCGCTGCACTTTACGACGCATCATGTCAGAGATTAGGGAGCTGGTGCCAGATAACAACCCTGAAACTCAGTCTAGCTGGTGTGAAGAATCAAATACTGAGACCGGCAGCACATCAATGGACAGCAGATGTCTCTCCATTGGTCAAGAATCATTCCAGTCCTTCACTGATGTTAATGAGACACAAGAAATTCTGCACACAGACAATGAAATGGAGCAAAATACTGAGGAGTTTATACTGACTGACTATGAATATGACGTTCTACCATCTCGAAAATGGGTGACTGAAAGCATCTATGATGTCCCAAACTCCGTGATTAGGAGACTGACTGAACATACAATTGACTACAGTTCTATACCATGCTCAGACTGGAAGGAGCACCACGTCAACTCATGGTTAAAGGCAATTGGGATTAAACCAGAGCACATAGAGAAACTTGAGAAAGAAGAGGTAACAGGACCTGTTCTTCAACACGTTACAAAATCATACTTAAAAGACCTTGGTTTTGGAGGTGGCCAAATACAGCTTTTGCTGTGTAAAAGGGATGAACTTTTATCCCAAGACAAGTCAAAAACAAATAAAAAGAAACCCTGTTTTGAAGAAGAACATGGAGAGGAGGCAAAACATGAAATTGTGTCTTCCAGTGATATCATTAGTCCTGAACAAAACTTTTCTACAAGTGATAATCTTGAATCAACTGTGTGTTTGCCACAAAGTAGGTTTCGGAAATTTAACGATAATGACGAACACTTCAGCTACATAAAACATGCCATACTCCCACCAGAGACTGGAATAGACAATCTGATCACTCCATGTCATGAGTATAAATCACTGGAAATTGCCTGTAAATTAGAACCAAGAAAGCTAAAGATCAAATTTGCCAGTGAAGTCCTTCGATTTGCATGTGCGTGCATGAATATGCGTGTAAATGGCACAATCCACTTTGGAGTCATGGACAAGACAAAAACATCATACAAACATGGAGAGATAATAGGAATTCCCATTGAAGACAAAGAGGTCTTTCAAGATGCTTTAGACTACATTGAAAATGGTTTTACGAAACAGCACTCTGATGCCAGAAAGTGTATCAAGCCCCCAAAATTCATTCCAGTTATTGACAAAGACAATCAGTCCCAAAATTGGATTGTAGAAGTAGATGTAGTTCCCATGGTGAATGTTGTGAGGGGAAAACTGTATAGTGCCCGTATTCCAAAGTTCAACGAGAAAGCAAATAAAGTTGAATATGAGCAAAAAGCTTATTATCAAAGAGTCGGGCCTAATACACCACGTGTTACTGATGATGAACTTGTCAGTTTCGTTCAAGCTCTCGAAGACCTTGACCAAAAAAGAGAATTTGAAGAAAACAACCAGAATCAGATACTGGCTCACGCTAAAGAGGACTTAGGAAGAAAACTCTTAGTCCTTCTGACACATGGCAAGAAATACATGGACAACACATTGCGTTACATTGTTGTTTCAAACAGATTTGATCAAGAAAACCTACAAAACATCAAGTTCCTTGCCCACATGAATATCTTCTGTGTTTTTGATTTTGACCCTGACTCAAAATTATCTGGACTTTGTCACAATTACCAAGAGCACCATGCTGTAAACCTTCACTTCCTGCGTGATTATGATCATAGGCAGAACACTGCTGACCTTGTCGAGAAGTTACAGCTCTATGACAGAACAAGCTGGATATTCTGCAATGGTCGAAATGATTACTTTGGAGATGAGTGTCCATGTGATGAAAAAACCTGGATCAAAAACAAGAAAAAACAGTTGAAAAGAGCTATATCTGAGATCTGCAATGAAATTCTCCCTAAAAGATCATTTGTGGTGGTTTTCATTCTCATGTCTGATGTTGAACAACCCCTTGTTGACACATTTCATGAATTCTATGCAGAAATGAGTGGCCATGAAGACATAGTCATAATCTCAGAATCAAGGGAGAATTATAAGAAATGGTCAAGCCATGCCCAAGTGTCTTGCTCGATGGATGTTCTTGAACAAATCAGTATTGTTGGTATGCCAATGAGTCACGTAGATGCTACAATTCAAAGCATTCAGCTCACCAGTCTTCAAGCTACTAGGTGTATGCCTGTGTCAAACAATGGAGTATGCTTTTTAAAACCTGTGGATGAAGATAGTATGCTCTCCTTAGAAGTAGTCCGTGTTGACCAGTGTGAGGAAACAAATGTAAAAGTCATGGAACAAGATCAAATACAGAAAACTGAACAATACTTCTATCAAGGAGGGAAAATTGACTGGATGAATTTGTGGCTGGCTGACAGAAATAAATGTGGGGAAGTCATCAAACGTGATGCATATGCAGAAATCAACAAAATGTTGGAAGACCTTGATCGGACTGACTCATTAAAACGGTCAATTGAAAATATCAACATATATCATCAACCTGGTAGTGGTGGAAGCACGGTGGCACGACAGATCCTCTGGAACTGGAGGAAAAAAATGCGATGTGCTGTTCTTGCACGACTGCTTTATGAAAACAAAAGTTTCGAGGATGCGGAGATTTGGGCTAAAAGAGCCAAGTCTCGTCTCCCACAGCACACATATATACTTGACACACTGGGACAAGTTTACAAAAAGTGGTTCTATGGAAAACATGATGCCATATGCATGAAAGGCTCTATTCAACCAGAGGACGTCACTGACATCATCGATACTGCTCTGAAAGGAATCACAGCTTTTAGAGAATCTGAAAAATGTCCCCAGTCAAGGACCGTCTGCCTGAACAATTCATATTTTGGAGAAGTTGATATTGGATGTCGATTGCTTAAGCTCCTTTTAAATGTTGACATTTTTGCTCCCAAAGAGGGAAAGAAGTTGTTGATAAGTTACCTGCTCACTGACTACATACCGAAGGAAGTACAGAAACCGTGGCAGAAGTTTCATGGACTTTTAAAAGGAATGAAAAACAGCATTAGAAACGCCTTGGAATGTATTTCTGAGGATCTTGCTCGCTTTCAGAATTACAGTTCTGAGGAAGAGGAGGAGTTAGATGAAGGACAGCCTGAAACGATTAATAATCCAAGAAAATGGCTCCTCAGGAAAAGTGCTGTGTATGCCGGGTTATTCTTTGTTGACATTCAAGAGGATGAGGCTTCTGATACAAACACAGTTTCCCCATTAATGAGACAAATGAAAACTTTCCAACTCGGAGGTGGTAATGTTACAACAATTCTTTACCTGCTCTCTAATAACAATAAACAAAGAGCTGGAGCAAAGCTTGAGGAAATAATTAGCCTTTTCCCAGCTAACCTGAAGAAGGATCTTGACCAGACGGAGCTCATAAACTTCATCTTCTGTCAGATAGCGCTCTCCTGTGCTTTACCTGGCTCTGGAAAACTTCTTACCATTGAAGAACTTCAAGATCTCAGCAGACGGTTTTGCAGTGAAAAGAGAACTGCCTTACCAGATACTGCATATTTGCTCCTTTCACTCTTATTTTGGCCGGAGGACTCTATGGGCAAAGAGCCCTACAATACAAGAAGCGATGTTGTCACGAATGCAATAAAATCACTTCACAGATATTCTGATTCTGCCTCAAGAAAAGGAAGGATTTTCACACACTTCCTCCTTGGAAAAGCAAGGGGTCTCAATAAAATTGTGCACAAGACCACAATTGAAAAATTCTGCAAGGGTACCCTCAGTGAGAGACGCCTCAAGTGGCAAGGTGGTGAAGTGTGGACAAACCCAGACGTTGTAAAAGTGCTTCAACGGGTAACTGGATACACTGACAATGGAAATCTGTTTGTTCGGGTATCCGATCAAAACAACATCAGAGTCATTCCACTTTTTTCTGCCTCCTTGCCAAATTCAAATGAGAATGTGACCTTCTATCTGGGGTTTTCTCTTCACGGAGTAGTAGCTTTTGACATCAAGGTGGCAGAGTGAAACCATACCTGAAACTACAACTGAGAATTTCACTATATACCATGAATTCAAATCACTGTAAGGGAGCTGAATGATATGAATATGTATAGAAGAATATGGGAATATCTGGATTTGTATATTAATTCTGTGCTTTTTGACATTTGTGTCTCTTACTGGTTTTAAGGGAATATTGTTGAATAATAAAAAAATCTTTATTTTTAATTTTATTTCAGGTGGAAATGAAACATTGCAGTGGTACTGTTGCTGTATACAGTAAATTATGTTTTACAATGTGATTTTATTTATCCATGCTATCATTTAATCCTATATTTTTTCAAGGCGTGATTTTCTTTTCACTTTCTTGGCAGATAGAAAAATTTATAACTAACTTTATATACTTACAAGATGCATTGTTGTTATTTAGTGATATTTCCTTGAATTTGTGTCAGTAGGTAGATGTTTAGGAAAAAATATATATATATTTTTTGGGTTGGTGACTCTCAGTGAAATTCACTGTATATATAAATTTGTATCACATAAACTTTAGAAATGGTTATAGAAATATGCCTGATATTGCATTACAAAACTGACAGATCTGAGATCATATTTACCATGTTGAAGAACAGTAGTTCCAGTATGCAATTCTGTGCTGTCCTGTGATGATTAGCTTCATATGGGATTGTCGACTGAACAATTGTTTTAAAATCACTCACACACATCTTTTAAGCAATGACTGCTACACAGCTGAGACTACATCCTAGAATCAGTTGTCACATTTAAACACTATGTGTTAATATATACACATTATTAAGAATCATTTAA

Function

symbol description
rhot1a Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including mitochondrial outer membrane permeabilization; mitochondrion transport along microtubule; and regulation of mitochondrion organization. Located in mitochondrion. Is expressed in fin bud; head; muscle; and somite. Orthologous to human RHOT1 (ras homolog family member T1).
rhot1 Predicted to enable GTP binding activity and GTPase activity. Involved in cellular homeostasis; mitochondrial outer membrane permeabilization; and mitochondrion transport along microtubule. Is integral component of mitochondrial outer membrane.

GO:

id name namespace
GO:0019725 cellular homeostasis biological_process

KEGG:

id description
K07870 RHOT1, ARHT1; mitochondrial Rho GTPase 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_00091982_00141515.mRNA True 8573 mRNA 0.42 40 91674 142316

Neighbor

gene id symbol gene type direction distance location
CI01000069_00075784_00090901 ATAD5 coding upstream 578 75394 ~ 91096 (+)
CI01000069_00066477_00068981 NUDT9 coding upstream 22325 66060 ~ 69349 (+)
CI01000069_00016660_00026781 ATP2A1L, ATP2A1 coding upstream 64840 16315 ~ 26834 (+)
CI01000069_00147622_00154047 NA coding downstream 5191 147507 ~ 154068 (+)
CI01000069_00246608_00247385 NA coding downstream 104195 246511 ~ 248179 (+)
CI01000069_00357901_00365747 NA coding downstream 215585 357901 ~ 366519 (+)
CI01000069_00403871_00404476 SOCS1A coding downstream 261290 403606 ~ 404493 (+)
CI01000069_00575065_00578555 EMP2 coding downstream 432749 575065 ~ 578643 (+)
G273257 NA non-coding upstream 36717 54579 ~ 54957 (+)
G273256 NA non-coding upstream 37128 54343 ~ 54546 (+)
G273255 NA non-coding upstream 37726 53741 ~ 53948 (+)
G273254 NA non-coding upstream 38176 53293 ~ 53498 (+)
G273253 NA non-coding upstream 38459 52872 ~ 53215 (+)
G273278 NA non-coding downstream 28586 170902 ~ 171320 (+)
G273281 NA non-coding downstream 30996 173312 ~ 173529 (+)
G273282 NA non-coding downstream 31395 173711 ~ 174053 (+)
G273284 NA non-coding downstream 33682 175998 ~ 266154 (+)
G273333 NA non-coding downstream 149869 292185 ~ 292397 (+)
G273359 NA other downstream 335411 477727 ~ 479081 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other downstream 1891084 2031954 ~ 2040427 (+)
G274270 NA other downstream 2530308 2672624 ~ 2681158 (+)
CI01000069_02894136_02894807 COX6A2 other downstream 2750530 2893418 ~ 2894947 (+)

Expression


Co-expression Network