CI01000069_00156359_00158953


Basic Information

Item Value
gene id CI01000069_00156359_00158953
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 155658 ~ 160090 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_00156359_00158953.mRNA
AGAGATAAATTCAGTCTGTATTAATTATATAGCTACTCTAAACGTCAGAAAATAAGCACCTGCTTCCAGCATAGCTTCCTCCGGAGAAGGAAAGAGTTCGCATTGCAAAAGCAGGTGAGCGGTATAGAGAAAGACAGACGTGTCCTCTTTTGACTCATCTCCGGTAAGCTGGTTCTCATGGCAGGAAGGAATCCAGCTGCTAGACAGAACAGGCAATGCTCACAGATGCTTAGGGATGGGTACTCATGTTTAGATGGGAAGCCTTGTCACACTAAATTCATTGCTACGTCATTACTGTTTACTAATGTTAATCTGAGGAAACTGCCTCCTTAAGATTCATTTCATTGTAAAAGGCAAAAACAAGGGGAGAAATTCTTCTGGGGCTTAGGCAAAACTAAAATAAATAAAAATACTCATACAATTAAAGATATAGAGGGCAAAAAATGTCCCTGTATGAGTTTTTGTTTGTTGTATGTGTGTAGATAGACAAACAGATATTGCTGAATATAAACATGATTGCAATATTGATTTCATACAAAAGTTCAATAAACAAGAAACTTGTTAGAATATTGTCAGTTTTTTTTTATTCAAAAACACTTCCAAAGCAACGTTTCGTTTCAGAGAGAATCAGCCTTTTTTTTTTTTAAATGAATGATTCAAAGATTCAGTTTAACGACTTGCTTATAAAGACCTACATACTGGTTTTAAAAGTAATCTATCATTTATTTTGCCCATCTTTTTTTTTTTTTGCATTCAAAATTTTTTACTTAAACATAATAAACTCACAACAATTATTTTTGCAAATGCAACAGCCCTATATTGTCTTTAATTAAATATTTAATAGTTTGACATTAAACATGACACATTTGATAAGGTTAAACGCTTGCTCTTGTAGCCTAAAGGCTTAAAAACACCCCTGGAAATCAATTTAATATCGTCCCTTAAAATAATTAAATTTCAGTGTTTTTCTAGTTAGTACACTGTAAAATGTAACTGATGATCTTACTAATAAAATTAAGTGATTTAACTCATTTTGAGTAAGTTTGTTGACCTTACTGAGTTTAACTAAGTAACAACAACTTTTTAGAACTGAAAGATATTAAACTCAATATATTCAATTATCCTCTACTTAAAATAATGAGTAGTACGAAATTTTTTGAGTGGTCATGCGCAGTTCTACCTGTAGGTGGAGTCAATTTGCAACGTATTCTGAGGGGAGAAGCACATGGAACGGATCTGTTTTGTGGAATGAGATATGCATTGGAAATATCAATGCAGAGTTCAATCACAACACAATCAGAAGCCTCAATCAAGAATTCTTCTCAGAGCTTTATCAACTTGCAGCTTGATTTCTGGAAATTTGTGCAACAAAGAAAGTGGCAGTTGAAAAGAGAGTTTATTGCGCAGATTAAATCTATGGACTGTGATTGTGACACACCCTTCTTCAGGATTCTGACCGTGATAACAGAAGACAGCCAGGATTCTTCCTCCACAAGAACTACATTTGGAGTCTTCATGCACAGCATTATTCTAGACTGAGCCATTATCATGGATGAACTTGAAAACCTTCCAGCTGCCATGTGACTAAGTTCTGGACTGATATGTGCCAAATTTGGAGTTTTTCTTTCCCTTGGACACAATTCTCTGAAACCAAAACTACATTTACTTAAAACCCTTCTGTTGATGTAAGCAAAGGCTGTTTGAGATCGTTAAAGGCTTAGTTCACCCAAAAATGTAAATTCTATCATCAGTTTTTCACTCTCATGTTGTTTGACTTTGGTTAGTCTTTCAAACACAAACTTAGATACTTTCAGTTGGAGGGACAGAAACCTCTCAGATTTCATTAAAAATAATTTCATTTATGTTTCAAAGTCTAACCAAAGTCTTATGATTTTGTGACGTCATGAGGGTGAGTAAATGATGAGAGAATTTCATTATTTATTTTTTTTTTGCAAACTATCGCTTTAATCTTACTGTTGCACTAAGGTCAACATTCTTTTTAATTAAAGTGTTAAATTGTCACCTGCCAAAGTTTAAACTGTCAAAATTAAGCTAACATTGATTTTTGTTTCATGGTGAGCTATTCAGTTTCTTGTCAAAAGACTGTTAGTATTATTGGTTTATTCATCAGTCATGATTTGTAATGCACATTGTTACATTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_00156359_00158953.mRNA False 2166 mRNA 0.33 4 155732 160090

Neighbor

gene id symbol gene type direction distance location
CI01000069_00142555_00146746 NA coding downstream 8547 142323 ~ 147185 (-)
CI01000069_00070778_00073734 BRAFLDRAFT_264576, BRAFLDRAFT_218264, BRAFLDRAFT_218328, PPP4CB, PPP4C, PPP4CA coding downstream 81329 70496 ~ 74403 (-)
CI01000069_00059923_00065619 MAPK3, MAPK1, MK03 coding downstream 89716 59853 ~ 66016 (-)
CI01000069_00044853_00051264 YPEL1, YPEL3, YPEL2, YPELD, YPELA, YPELC coding downstream 102836 43906 ~ 52896 (-)
CI01000069_00041648_00043198 EHD3 coding downstream 112291 41648 ~ 43441 (-)
CI01000069_00197131_00227540 XYLT1 coding upstream 36999 197089 ~ 227924 (-)
CI01000069_00254198_00256321 NA coding upstream 93920 254010 ~ 257542 (-)
CI01000069_00258308_00258828 NA coding upstream 97814 257904 ~ 258828 (-)
CI01000069_00310071_00347019 NA coding upstream 149933 310023 ~ 347460 (-)
CI01000069_00368959_00387447 RAB40C, RAB40C.L coding upstream 208628 368718 ~ 387658 (-)
G273483 NA non-coding downstream 1647 151536 ~ 154085 (-)
G273482 NA non-coding downstream 35083 99720 ~ 120649 (-)
G273488 NA non-coding downstream 88733 66298 ~ 66999 (-)
G273493 NA non-coding downstream 107229 48300 ~ 48503 (-)
G273528 NA non-coding upstream 108065 268155 ~ 268357 (-)
G273530 NA non-coding upstream 111635 271725 ~ 271933 (-)
G273531 NA non-coding upstream 112080 272170 ~ 272535 (-)
G273580 NA non-coding upstream 166116 326206 ~ 326427 (-)
G273591 NA non-coding upstream 186198 346288 ~ 346651 (-)
CI01000069_00952894_00955774 NA other upstream 653145 952361 ~ 955790 (-)
G275178 NA other upstream 766833 926923 ~ 945804 (-)
CI01000069_01645966_01647142 NA other upstream 1485678 1644522 ~ 1647326 (-)
CI01000069_02589498_02621318 SYT3 other upstream 2451085 2589469 ~ 2621641 (-)
CI01000069_02997434_03008924 NA other upstream 2828936 2997275 ~ 3008924 (-)

Expression


Co-expression Network