CI01000069_00197131_00227540 (XYLT1)


Basic Information

Item Value
gene id CI01000069_00197131_00227540
gene name XYLT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 197089 ~ 227924 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_00197131_00227540.mRNA
ATTGACCTTTATGTAGTCCCTTCTTAGAGTTAAAAGAACCAATCACGCGTTTGGTCAGTTTAATGCATGCTTGCAGAATAAAAATAATTTCTTTCAAAGAAAAATTATCTTTTCAATGGTAGTGTATTGTTTATGTATAGCCGTTATGTGAAAGGTTTAATATTTATAATCGACATCTTTATTCTCAGTGTAAGACTGAGCATTTAACTTGTATGTTCAAGCTGAAATTGGCAAATGGATTGCTAATATGATTACCAAATAAATAGTGCATTTATTTGCAAAACACCATGTAGATATTCATCCTGTCATGTCAGAGATCATATCCTCTCCTAAAGCTTTCACAGCTACAGAGACGTCTCCTGCAATCAGATCAGCGCTCGGGTCATGGCTGCAACCTCCTTCCTGTTGCACACACCGTTGCTAGTGGAATATATCATCAACAGTGACACTTGCAGGAAACTGCAAAATATCAGAAATGACCCATACGAGGTCATGCTCACAGTGAATTACTGTGTGGACGGCTACTACTCGCACCGACCCAAGGAGAAAGTCCGCGTGGACAGCAACAACGAGAACTCCGTTCCCAAAGACTTTGAGAACATAGACAACAGTAATTTCGGGGCACGTTCACAGACACAGAGACATGCGCCCGGCAAGCACAAACAAGGCCTTCTGGAGAAGGCGCATGCGCAGCAAAGCCTGAGCAAGAACTCTAATGAGGTCATTCAGTATGCACAAAACAAAGGTGGCTACAATCAGACGCGCACTGAGCTTCACCGGAAGGCCAATCCCACCCTTCATCCACAGCAAACCCAGCAGCACCGGCACCACCTCCAGCAGGCCAAGCGATCTGCCACACCCACCGCAGACATCAAATACGACCAGCCGCCCAAATGCGAGATCAGTGGCAAAGAGGCAATCTCCGCCCTCTCTCGTGCCAAGACCAAGGAGTGCCGGCAGCAGATAGTGGAGGTTTACTGCCGCCACAAAGAACGCCAGCTCATGCCTGAGAAAGTCACCCGTTATTGCCCGGTAGAGGGCAAAGTGAATGTGAATGTGCATTGGGAGGAGGACTCAATGGAGACTGTGCCTGCTGTGCCGGTGCGGATAGCCTTCATGTTGGTGGTCCATGGACGGGCCTCTCGTCAGGTGCAGCGTCTCTTCAAGGCCATATACCACACATCTCATTTCTACTACATTCATGTGGACCAGCGATCTAACTACCTCCACAGGCAGATGGTGGCTCTGGCTCACCAGTATCCCAACGTCCGGGTCACACCGTGGCGCATGTCTACGATATGGGGCGGTGCCAGCCTGCTCACCATGTATCTAAAGAGCATGAGGGACCTGCTGGCCATGCGAGATTGGTCCTGGGATTTCTTCATCAACCTGAGTGCTGCTGATTACCCAATCAGGACCAACGATCAGCTGGTGGCCTTCCTGTCCAAATACAGAGATATGAATTTCATCAAGTCTCACGGGAGAGATAACGCTCGATTCATCAGAAAACAAGGTTTGGACCGGCTTTTCTTTGAGTGCGACACCCATATGTGGCGGCTTGGAGACAGGAAAATTCCAGAAGGCATATCCGTAGATGGAGGCTCTGACTGGTTTCTGCTCAACCGAATGTTTGTGGAGTATGTCATCAACTCTCAAGACGACCTTGTGACCAACATGAAGCGTTTCTACGCATACACGCTACTACCTGCAGAGTCGTTCTTCCACACAGTTCTGGAGAACAGTCCGCACTGCGAGAGCATGGTGGACAACAACCTTCGCATCACTAACTGGAATCGAAAGCTGGGCTGCAAGTGTCAGTACAAGCACATCGTGGACTGGTGCGGCTGCTCACCAAATGACTTCAAGCCCTCCGACCTGCCCCGTTTCCAGCAAACCACCAGGCCCACATTCTTTGCAAGGAAGTTTGAAGCCAGCGTAAATCAAGAGATAGTGAACCAGCTGGACGTCTTTCTGTTCGGGAGTATGCCGCAGGGCACGCCGGGTCTCAAGGCCTACTGGGAGAATGTTTTTGATGAAGAGGATGGGATTCACAGCCTGTCCGACGCACATCTCACTTACTATCATGCCTTCGCCCGATTGGGTCTGGCACGAACTGCCAACTCATTACAGGGTGACCTCAATGACAACAGCTGCAGTGCAGTAATGCCTGGCGTCGCTGCTGTTTCTGTGCAAGGGGAGCACTGGTGCATTCTGACAAATGAGCCACAGTATTTGGACCCTGCAGAGGGACTCGTCAGGCACAAGGAGGAGGTTGTTGCTGGCCGGTATTATGCCATGGGACATCCTGTGTCTGTCCACATCTACTTCCTGTCTGATGAGTTCCAGGGATACCTGGTCAGGCATCACGCCACCAACTTGGCAACCAGCAAACTGGAAACCCTGGAGACTTGGGTCATGCCCAAACAGTTCTTCGAATTCACCAATCCACCCAATACCTTCAACCGACTGCAGTTTGCAGAGATTGGAACAGACTGGGATGCTAAGGAAAGGATATTTCGGAACTTTGGGAATCTTATGGGACCCATGGATGAGCCTGTGGGAATGCAGAAATGGGGAAAAGGGTCAAATGTGACTGTGACTGTGGTGTGGATTGATCCCACCAATGTCATCGCTGCCACCTACGATATCCTAATCGACGCCAGTGCTGAATTCACACACTACAGGCCTCCTCTGAACCGGCCCCTGCGGCCCGGCATGTGGACCGTACGCGTGCTGCATCACTGGACCCCTGTGGCAGAGACACGCTTTCTCATCACTCCCCTTACCCACCACAAACACCTGCCTATACGCCAAGAGGATGCTTTAAAAACGCACAACGGGCCGGCCAAGAACAGCTATATGGAGCAGAGTTTCCATGGTCTGAACCCTATCCTCAACATCCCGGTCCACCTGGGTCAGGTAGAGGCAGCCGAGCACAACGCAGAGCTTACGGGGTCCGAGCTGGAGCGCTGGGTGGACAGTCTGCTGGGCAAAGTGTGGTCAGCTGTGGACGTGTGTTCAACAGGCCCCAGTGGCTGTCCAGTCATGCAGACTTGCAGGGAAACGGTGTGGAGCTCTCTCAGCCCGGACCCAAAGTCCCAGCTGGGCCCACCCAAAACCAACGGACGAATCAGCGTCGCTCGTGTGAATATGAGCAGAACGGACCTTTCTCAAACGCAAGACACGGGCCACGAAAATGTACGCTGCAAAGTTTTTGAATATTATTTTAAAAATGTGCGGCCTCTGGCTATCTCAAACTCTGAGTGCTCTAGTGATGCTTTTCACTGGATCAAATGAAGTGAAACAGGCATTTAAAGCCTTCAGACTCCCCCTAATAAA

Function

symbol description
xylt1 Predicted to enable protein xylosyltransferase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis and proteoglycan biosynthetic process. Predicted to be located in Golgi membrane. Is expressed in cartilage element; forebrain; and opercle. Human ortholog(s) of this gene implicated in Desbuquois dysplasia; pseudoxanthoma elasticum; and type 1 diabetes mellitus. Orthologous to human XYLT1 (xylosyltransferase 1).

GO:

id name namespace
GO:0048701 embryonic cranial skeleton morphogenesis biological_process

KEGG:

id description
K00771 XYLT; protein xylosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_00197131_00227540.mRNA True 3339 mRNA 0.51 14 197089 227924

Neighbor

gene id symbol gene type direction distance location
CI01000069_00156359_00158953 NA coding downstream 36999 155658 ~ 160090 (-)
CI01000069_00142555_00146746 NA coding downstream 49904 142323 ~ 147185 (-)
CI01000069_00070778_00073734 BRAFLDRAFT_264576, BRAFLDRAFT_218264, BRAFLDRAFT_218328, PPP4CB, PPP4C, PPP4CA coding downstream 122686 70496 ~ 74403 (-)
CI01000069_00059923_00065619 MAPK3, MAPK1, MK03 coding downstream 131073 59853 ~ 66016 (-)
CI01000069_00044853_00051264 YPEL1, YPEL3, YPEL2, YPELD, YPELA, YPELC coding downstream 144193 43906 ~ 52896 (-)
CI01000069_00254198_00256321 NA coding upstream 26086 254010 ~ 257542 (-)
CI01000069_00258308_00258828 NA coding upstream 29980 257904 ~ 258828 (-)
CI01000069_00310071_00347019 NA coding upstream 82099 310023 ~ 347460 (-)
CI01000069_00368959_00387447 RAB40C, RAB40C.L coding upstream 140794 368718 ~ 387658 (-)
CI01000069_00388295_00388899 NA coding upstream 159836 387760 ~ 388926 (-)
G273483 NA non-coding downstream 43004 151536 ~ 154085 (-)
G273482 NA non-coding downstream 76440 99720 ~ 120649 (-)
G273488 NA non-coding downstream 130090 66298 ~ 66999 (-)
G273493 NA non-coding downstream 148586 48300 ~ 48503 (-)
G273528 NA non-coding upstream 40231 268155 ~ 268357 (-)
G273530 NA non-coding upstream 43801 271725 ~ 271933 (-)
G273531 NA non-coding upstream 44246 272170 ~ 272535 (-)
G273580 NA non-coding upstream 98282 326206 ~ 326427 (-)
G273591 NA non-coding upstream 118364 346288 ~ 346651 (-)
CI01000069_00952894_00955774 NA other upstream 585311 952361 ~ 955790 (-)
G275178 NA other upstream 698999 926923 ~ 945804 (-)
CI01000069_01645966_01647142 NA other upstream 1417844 1644522 ~ 1647326 (-)
CI01000069_02589498_02621318 SYT3 other upstream 2383251 2589469 ~ 2621641 (-)
CI01000069_02997434_03008924 NA other upstream 2761102 2997275 ~ 3008924 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026369 xylt1 coding NC_007114.7 CM002887.2 26418451 ~ 26524934 (-)
bowfin (Amia calva) AMCG00018325 xylt1,LOC107567884,LOC107729195,LOC107690267,LOC107733871,LOC107590574,LOC107686990,LOC106588898 coding CM030135.1 CM030135.1 8290001 ~ 8315541 (+)