CI01000069_00258308_00258828


Basic Information

Item Value
gene id CI01000069_00258308_00258828
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 257904 ~ 258828 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_00258308_00258828.mRNA
CGGAGCCCTTGCCAACCGCCCCCTCTCTCCCTCTCCACGCTCCTTTCGCGACGCTGAGCCACAAAGCGGACTGTCGGCGCACGGCAGTGGCACCTCGCCGCTTCAGGGTGAAGATGTTCGGCAGTCTGTGCGCCCGTAAGCTGGCTCGCCGATCGCGGTCAGCGTTAATAGCCGCGCTGACAGTGCTGCTGGTCCAAACGCTCATCGTGTGGAACTTCAGCAGTCTGGACACGGGAGAAGACCGAAAAGACAACGGTAGAGAGAAGAGGGACCGAATCGGCATCAACAAAGCCTACAGCGAGTACCCGAAGAGCGGCTACCAGAAGAGGCATCACCAGCCGCCGCTTGGGAAAGCGTCCATTCGACATAAACAGCAGCCGGTAAGGCGGAATTTCCCCGTTCGTCGCGAAACCATTCATTCCTCACGGTCCGCCGTCATAACGGGCCCGTTCTCGTTCGGAAATGATCCCCAGACCCAACGTTTCGGGGTGTTTATGTTTACAGGAACGGTGGCAGGATGATTTGTTAGTGATGTGCTGAAATGTAGCCCTTTGTTGTCATGACTATACCAAGGCTGAGGATGTGACAGTCGCGCGCGCCGCGTAAGATGCAGTTTTGTTGGATACTTTAGCATCTCGTGTGACGGATCGCTGTCCGTTAAAACTCCCATTAAGTTGTTGCTATTGTAATTGTGTATGTCGGCGGAAGAGGCAGTTCAGCTATCATGCGTTGCTTTAAGATCATGTTCATGTCATTTGTTGGTGATATTATGTGCTGGGAGTGATCTCGTCATGACCTTTATGAAGAGTGAAATTATGTATGATATATAATCCGGTTCTATCGGCTATGGATATAGTGTAAATGCGTCGATTTTGATATTAAATGCCCTTTTTTTTATCCTCCTATCGGTCAGTTTTACAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_00258308_00258828.mRNA True 925 mRNA 0.51 1 257904 258828

Neighbor

gene id symbol gene type direction distance location
CI01000069_00254198_00256321 NA coding downstream 362 254010 ~ 257542 (-)
CI01000069_00197131_00227540 XYLT1 coding downstream 29980 197089 ~ 227924 (-)
CI01000069_00156359_00158953 NA coding downstream 97814 155658 ~ 160090 (-)
CI01000069_00142555_00146746 NA coding downstream 110719 142323 ~ 147185 (-)
CI01000069_00070778_00073734 BRAFLDRAFT_264576, BRAFLDRAFT_218264, BRAFLDRAFT_218328, PPP4CB, PPP4C, PPP4CA coding downstream 183501 70496 ~ 74403 (-)
CI01000069_00310071_00347019 NA coding upstream 51195 310023 ~ 347460 (-)
CI01000069_00368959_00387447 RAB40C, RAB40C.L coding upstream 109890 368718 ~ 387658 (-)
CI01000069_00388295_00388899 NA coding upstream 128932 387760 ~ 388926 (-)
CI01000069_00391688_00397509 PIGQ coding upstream 132191 391019 ~ 397597 (-)
CI01000069_00411079_00477452 CLEC16A coding upstream 151464 410292 ~ 477452 (-)
G273483 NA non-coding downstream 103819 151536 ~ 154085 (-)
G273482 NA non-coding downstream 137255 99720 ~ 120649 (-)
G273488 NA non-coding downstream 190905 66298 ~ 66999 (-)
G273493 NA non-coding downstream 209401 48300 ~ 48503 (-)
G273528 NA non-coding upstream 9327 268155 ~ 268357 (-)
G273530 NA non-coding upstream 12897 271725 ~ 271933 (-)
G273531 NA non-coding upstream 13342 272170 ~ 272535 (-)
G273580 NA non-coding upstream 67378 326206 ~ 326427 (-)
G273591 NA non-coding upstream 87460 346288 ~ 346651 (-)
CI01000069_00044853_00051264 YPEL1, YPEL3, YPEL2, YPELD, YPELA, YPELC other downstream 210690 43906 ~ 52896 (-)
CI01000069_00952894_00955774 NA other upstream 554407 952361 ~ 955790 (-)
G275178 NA other upstream 668095 926923 ~ 945804 (-)
CI01000069_01645966_01647142 NA other upstream 1386940 1644522 ~ 1647326 (-)
CI01000069_02589498_02621318 SYT3 other upstream 2352347 2589469 ~ 2621641 (-)
CI01000069_02997434_03008924 NA other upstream 2730198 2997275 ~ 3008924 (-)

Expression


Co-expression Network