CI01000069_00962392_00964350


Basic Information

Item Value
gene id CI01000069_00962392_00964350
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 959810 ~ 964499 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_00962392_00964350.mRNA
TTATAAAGACCACGCCTCTTCTGAACCGCCAATAGAGAGAGTGTGTACACCATCATTGGACAACCTATTAGAACACTGACAGAGCAAGAGGGAAAAGAAAACAAACAACACATACCAAATACAAGAACGCAGGTCGTAACAATAAGCATGCTTTTATTTTTTTTATTTTTTTATTTAAGGGTAAATAATAAGTTTTTAAAGGAGAATTCCTTTAGTTTTGCATTTTAAAAATATGAAATATATTCTCTCCAGTAAGAGCAACACTTTCTGTTTTTTTGCCACCTAGCTAAATAAATAAATAGTACTATCAAGCTTTCCACAAAGTATTACATGTGTTTCAACCTGAACAAATTTTCTTTTAGACATTATTCAATAATGTATTTGTTCATTTATTATTTATTTTAATTGATCTGAAATATTTTAACCTGGTGTGAAATGAATTTAGTGTAAATATGTGAGATGACCCAGATCCTGGTGCTCCAAATTTAGTGGCAAAGCAATCACAGATTCAGATCCAGCTTGGATAATTCTCCCAAGATGTTGTGGCTGTTGGTTGCACAAAGAATGCATAATTAAAATCTGAAACAATCCATGAACGCATATCTGTGAGTGCAATTTGTCCATTGCTAGGCAACTGTACCACTTCTTAACTGTAGGGGGAACTGAACCTATATGTTTGGTTTCAGATGTGCTTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTGATTAATTACTCACCCTCATGCCGTTCCACACCTGTAAGACCTTCGTTAATCTTCGGAACACAAATTAAGATATTTTTGTTGAAATCCGATGGCTCAGTGAGGCCTCCATAGCCAGCAATGACATTTCCTCTCTCAAGATCCATTAATGTACTAAAAACATATTTAAATCAGTTCATGTGAGTACAGTAGTTCAATATTAATATTATAAAGCGACGAGAATATTTTTGAACTGATTTAAATATGTTTTTAGTACCTTTATGGATCTTGAGAGAGGAAATGTCATTGCTCCCTATGCAGGTCTCACGGAGCCATCGGATTTAAACAAAAATATCTCAATTTGCGTTCCGAAGATTAACGAAGGTCTTACGGGTGTGGAACGGCATGAGGGTGAGTAATAAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAATTGGTTTTTGTTAAGTTAAATGTTATAAATCATACTTCAGATGTTTATATGTTGTTGTTGTTTTTCATGCTTTGTACACTTTGTATTACTTTATACAGACAAATACAGATCTTGTGCACAGAAAAAAATTAATAATTGAAAATTAAGAAATGTAAATTCTGATTCCAAATCATATTTCTGCAATCTGTCTTGCAAATATTTAAGATTGCCTGTTCACTCATGTTTTTGCATATGAGTGTTTGTTTGGAGATTTCTGTTTGGGGTCTGTGAAATCCATTTAGTCATGTTTTACTTTCCCTGTTGTCCGCTGCACGGAAATCTTATTCAGAACATCCAGGGATACGAGGACGTACGCCTACACAAACTGTGTTAGATTTAGATTTAGATTTACTGTAAAGGAGGTAAAGCAACCATGACCAGATGGACCAGCAGAAGTGTTTTGTTCCTGGTCATAATCTTCCTGCTGATGCCTCTAACCTGGACACGGAGAGGAGCACCAGCTGAGACATATAAAACCTTAAACCAAAGACTGAAAAGGCTGAATCAGCAGTTCATGAGATTCAAACAGATGACCTTCACTCATCTTCAGAGCATTGCTGAAAACTACAACATTTCAAACAGCATTGACTCTCGATTTCAAGTTTTGAGTCTGCAATTTGAGAGGATCTTCAGAGAGCTCCAGGGATTTAAAAAAACAACAGAGCGCAGTCTGAAGTCCCTCAAATCCTGGACTAAGAGTCTACAGAAAAAGACTAAGAGGCTTGACTTGAGTCTGGCCAACATGACAAGAGCTTTGAGGGAGAACAACCATCTCAACCTCAGACAAATCCAAAAGCAGAGAACACTGCTTTCTGACCTGTCCCACAAGATCCAGAACCAGCAAAGTCACATCGGCTCTTTGGAGTCCTTGAGGAATCAGGTTCAACATGGGATGCAGGATCTTCGGGCCTCTCTCAAAAGGCATCAGACCCAGATAATGAAGTTGGAGAGTCAGATGCAAGGGTTGTTTAAGATCATTTCAGCTTCCAAGGCAGGAGTTTTAGATCCCCCCAATTCTAGGAAGCAACAAGGTGTGGTTCTGAGGCATGTCCAGCCTAAACCGAAGCCTGAAGAACAAAAAATGAGAGATAGATTGCCAACTTCTGGGCCCACCAAACAACCACAGACACATAAAATAAGACACAAACAACAGCAACCCTGGCAGAGCACTGTACAACCAACAGTTGAGGCTGAAGAGGAACTTTTTCAGCTTCCTCTTCGACACAAAATCCCACGTATTCAAGCCCCAAAGGAAGAAGCCAGAAAGAACAATGACAATATGCTTGTTCTCTATGGCCGAAATTCTGGTGTACTGGGCTTCATGGATTTTGTGATTGGAGATCCAGCGTATCGTGAATTATCTTTACAAAATATCCAGGATGGCCGCTGGCACCATTTATGCATCATCTGGTCTTCCATTGAAGGCAGGTTTTGGTATTATTCAGACAGTCGTCTCGTATCTACTGGATCCAAGTTCCAGAAGGGTTATGAGATCCCTCCTGGGGGCTCTGTGGTCCTGGGGCAAGAACAGGATTCGGTTGGAGGGGACTTTGATGAAGCTGAAGCATTTGTGGGCAGACTGGCTGGCTTTGCGTTTTGGACTAGGACCCTAAGCCCTGGGGAGGTGTCTGGGCTGGCCACTGGCAAAGGGGTGCCACGAGGAGTAGTGCTCACCCTGGATGATGTAGACCAGATGTTTGGCTCTGTTCAGCACATTACCTGTGAGTGTCTGGAACACTGCATGTAAAGGCATGACAGAATCAGCCAGAAAAACACCTCTGTATACACATTGTTTTTTTATTTCCATTTATTTTGGTAAAACAACACTGTTTATTTTTATTGATCAAATTTTACACATTTGGTCTTACTAACTTTTGACTATAAACTTTGCTTTAA
>TU310676
TGACACTCCACATTTGAAAGTATTTTGTTTAAAAAATCATGTTTCTTAATAGTTTTTGTTATCAGTTATATACATTAGGGTTTTATGTTACATCTTCTGTTGTTTAATGAATGTTTATTGCATTATGTAAGTGTTGTGGGTTACCATGATGGTGTTTTGCGTTTGCGTGAATGACTCTTTGCACCCTCTTTACATTAGTATATACTTCAGCCAGTGGAAAAGCTACTTGTGATGAACTCTGATTCTTCATGTGGCTTTCTCTTTTACCACCTGCATTATTATGGTGGTTGTCAGTATATGTTAAAGGTACAAAACAGACTTTAGTAGTGTGCATTGTTGAATTTACTTGTTTACGTTCAAATTTTCTTGTTTGTAAATTACAGTTTTATACTGTAAAATTGACAGTTTGTTCTGTAAATGTGTTTACAGTTTTTCTGTATTTTTTACAAAATTATTCTGGCAACCACAGCTGCCAAAATTATTTTGTAAAAACTACGGAATATTTTTTACAGTGTAAAGAAACTGGGTCGTGGTAGTGGAATCCCAGTTGCAAATCACTCCGGTCGATAATCAAACAAATGCACAAAACTACTTAAGGAAAATGATTGAATTTATTAAAAATAAATATAACAAGTGAAAGAGAGCATCTCTTCAGGGTGTCCAAAGGCCAAAATAACAAACAAAACAAATCTAGAAAGGAAAAGAGGGAGGGATTAAATAACCTAAGTACATATAAAAATAAAATACATTTACCTTTCTTAACTCCCTAATGAAAAACAAAGCACAAACCAAGTTAAAACAAATAGGCAGGACACCCCTACGCTCCAAGTTCTTGAAATATAACTTTAGGAACAGTTGAACATGACCAACAGCTTGTACAATCAGTACACTTTCACTTGGAAGTAACAAGTTTGATCATCGGCCGGAGGAGGGATCCAGGAGCTCTCAACCCAAACACGGCTGAACCAACAATGAGCTCCATGTTGAACGCAGGCAGCCGCCTTATAAAGACCACGCCTCTTCTGAACCGCCAATAGAGAGAGTGTGTACACCATCATTGGACAACCTATTAGAACACTGACAGAGCAAGAGGGAAAAGAAAACAAACAACACATACCAAATACAAGAACGCAGGTCGTAACAATAAGCATGC
>TU310675
TGCATTATTATGGTGGTTGTCAGTATATGTTAAAGGTACAAAACAGACTTTAGTAGTGTGCATTGTTGAATTTACTTGTTTACGTTCAAATTTTCTTGTTTGTAAATTACAGTTTTATACTGTAAAATTGACAGTTTGTTCTGTAAATGTGTTTACAGTTTTTCTGTATTTTTTACAAAATTATTCTGGCAACCACAGCTGCCAAAATTATTTTGTAAAAACTACGGAATATTTTTTACAGTGTAAAGAAACTGGGTCGTGGTAGTGGAATCCCAGTTGCAAATCACTCCGGTCGATAATCAAACAAATGCACAAAACTACTTAAGGAAAATGATTGAATTTATTAAAAATAAATATAACAAGTGAAAGAGAGCATCTCTTCAGGGTGTCCAAAGGCCAAAATAACAAACAAAACAAATCTAGAAAGGAAAAGAGGGAGGGATTAAATAACCTAAGTACATATAAAAATAAAATACATTTACCTTTCTTAACTCCCTAATGAAAAACAAAGCACAAACCAAGTTAAAACAAATAGGCAGGACACCCCTACGCTCCAAGTTCTTGAAATATAACTTTAGGAACAGTTGAACATGACCAACAGCTTGTACAATCAGTACACTTTCACTTGGAAGTAACAAGTTTGATCATCGGCCGGAGGAGGGATCCAGGAGCTCTCAACCCAAACACGGCTGAACCAACAATGAGCTCCATGTTGAACGCAGGCAGCCGCCTTATAAAGACCACGCCTCTTCTGAACCGCCAATAGAGAGAGTGTGTACACCATCATTGGACAACCTATTAGAACACTGACAGAGCAAGAGGGAAAAGAAAACAAACAACACATACCAAATACAAGAACGCAGGTCGTAACAATAAGCATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_00962392_00964350.mRNA False 3103 mRNA 0.39 3 960812 964499
TU310676 False 1153 lncRNA 0.36 1 959810 960962
TU310675 True 882 lncRNA 0.36 1 960081 960962

Neighbor

gene id symbol gene type direction distance location
CI01000069_00932460_00950854 USP7.S, USP7 coding upstream 9365 932310 ~ 951447 (+)
CI01000069_00925578_00927804 NA coding upstream 32993 925319 ~ 927819 (+)
CI01000069_00910238_00919183 NA coding upstream 41109 909886 ~ 919703 (+)
CI01000069_00743257_00745220 NA coding upstream 214741 743182 ~ 746071 (+)
CI01000069_00596413_00741443 GRIN2A coding upstream 219369 596413 ~ 741443 (+)
CI01000069_00966300_00979227 CLCN7 coding downstream 1801 966300 ~ 980520 (+)
CI01000069_00994148_01017851 ARHGDIG, GDIR2, ARHGDIB coding downstream 28953 993452 ~ 1018734 (+)
CI01000069_01020120_01022182 ECI1 coding downstream 55621 1020120 ~ 1022291 (+)
CI01000069_01027083_01031960 NAT15, NAA60 coding downstream 62584 1027083 ~ 1032781 (+)
CI01000069_01047561_01050241 NA coding downstream 82996 1047495 ~ 1050340 (+)
G273761 NA non-coding upstream 36406 922448 ~ 924406 (+)
G273459 NA non-coding upstream 199041 761569 ~ 761771 (+)
G273456 NA non-coding upstream 203570 757005 ~ 757242 (+)
G273408 NA non-coding upstream 455692 504865 ~ 505120 (+)
G273407 NA non-coding upstream 456666 503646 ~ 504146 (+)
G273770 NA non-coding downstream 58671 1023170 ~ 1023898 (+)
G273827 NA non-coding downstream 120233 1084732 ~ 1084941 (+)
G273850 NA non-coding downstream 154877 1119376 ~ 1120080 (+)
G273848 NA non-coding downstream 183965 1148464 ~ 1178111 (+)
G273955 NA non-coding downstream 381878 1346377 ~ 1346723 (+)
G273359 NA other upstream 481731 477727 ~ 479081 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other downstream 1068901 2031954 ~ 2040427 (+)
G274270 NA other downstream 1708125 2672624 ~ 2681158 (+)
CI01000069_02894136_02894807 COX6A2 other downstream 1928347 2893418 ~ 2894947 (+)
G274603 NA other downstream 2835524 3800023 ~ 3803501 (+)

Expression


Co-expression Network