XLOC_010476 (rabac1)


Basic Information

Item Value
gene id XLOC_010476
gene name rabac1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10828787 ~ 10837245 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020564
ACATCATATCCGCTGCACATCAACACAGTCAACACATCTACACAAAGTGCTaCACGTCGAGATGGATGCAAAAGTAAGTGACCCCTTTAGCAGCGAGGCAGATCAGCTTCCAGGAGCAGGAATTGTGGGAAGGCTTTGGCTGCCCAAAGGTCTGTCTGGAAATGTGATTAAGGATTGGGTGGACCGCAGGCGGAAGTCCATCCGTCCGTGGGCCGGCTTTGTTGACCAGCGCAAGTTTTCCAAGCCCCGTAATTTTGGAGAGCTGTGCCAGCGTGTTGTGAGGAACCTGGACACCTATCAGAGCAACTACACCTTCATCTTCATGGCTCTCATCCTCTATTGCATTATCAGTTCTCCAATGCTTTTGATTGCTTTGGGAGTGTTTGCTGGTGCCTTCTATATAATCCACTTGAAAACGCTGGAAAAGAAGCTGGTGGTTTTTGGTCGTGAATTGACTCAGGGACACCAGTTGGGTTTGGCAGGAGGGGTTTCCTTCCCAGTCTTCTGGCTTGCAGGAGCAGGATCCGCTGTCTTCTGGGTTCTAGGTGCTACCCTGGCTGTTATCGGGTCTCATGCTGCGTTTCATGAGCTGGAGTCTCCTGACGTGGATGAGTTGCTCATGGAACCCGTTTAAACCTCTCACCTTTGACCTTTTGCCTCACGTTAACCTCAAATGTCTCCCCTCATCTTTTGTATCAGCACCTGTTGGTTGCACTAATCTAACAATATTAGTTTACTGAACGATTGGCCAGGAAAGACTGTTAAATGGACTGTTAAATGGCCCAGACAGATGAAGCACATTCAAAGACCTTTAAATGCCTTTACTGGTACCTGTTagtttgttacattttatttattttgaaatatcaaAGCACAAGGTAGTAAATGAACTAAGaccatgtaaaaaaatgcagtatAGTCAAACGTTTGAGAGATTCACTTTAAGAATGTTGTAAACTAGTAGCCACTGACATCAGTAATAGGataataaatactatggaagtctaataataataaagaataaataaactcaaacaggatTGGAGCAAAATgatagtgagtaaatgatgacagaattttcatctcTTTAAAGCAGGGCTGCCCAAACCTTTTTTTCATGAAGGGCAAAAACAAAACTTGATTGAGCGTGGTGGGCCGaagctaaatataccaaactCTATTACATTATTTGCCAGGATCACTTActaatttaacaatatttaaaaataaatagaaaaaaatctaatcatattattaataataataaaaataaaaactttttttaatactgTACTTATAATACATTAAAACCCGAcactatctctttttttttttacaaaaacgaTATAGTTTTAGCAACGTGCCACACACAAATACTATTATATAAAATGGATTTCGTGActctttaaaattttttattaattcacaacatttaatttcacttaattgttttgtagttcatcaattaaacaaacaaacataggttatgttaaattagtgatgatctctGTTGAAGACATTCGCCTCAACCTTACCCATAATTCTCCCACTCgactcagatgggatggtgggccaaatcaaaagttaccgcaggccctagtttgggcatcactgCTTTAAatgcacagttcacccaaaacataattttaaagttgaatgacttttattttgacagacTTTTCAAAGACTTTAACTGTTTTAATAGGCTATAAAGAAACTGACAAAACAAATAGCcttttttttcagtaaatgttTAACAGCAGAATGAAATAAAGTCTTATATTGGATTAATAACGTGAATAACGTAAGGGTGACTAAATAATGACTGGATTTTGACACATTTTGGGCCATGTATATTCGATATATATGGTATTTTAAATCTGCTTAATCAGCTTTTGATCAAAAGGTCATGCTAGCTCATCAGAAAGAGCATGAAAAATCAAACAACACGATTGTATTGTTTCGATGGTCAGTTTCTGTGGTATGTGGGTACCGGTTATTAcataatcattttgttttgagCTATGCTTAATTTTTCTTACATTAGCCAGTCAGCCATGCATGATTTAATAACCGCATGATAAGCAAAGATCATGTATTTCTGCTATTCAGTGTAACCTGATGCCAATATTCCCAGTGGaagcattttttttcattatacaaGTTCTCCTTTTATGCAAACATTTGcttttttgacttttattttgcagCTTGTTTCTGTTGTATTGATAAGTGGGATGTGCAATAAAATGCTTCGCCTGTA
>TCONS_00020565
TGCACATCAACACAGTCAACACATCTACACAAAGTGCTaCACGTCGAGATGGATGCAAAAGTAAGTGACCCCTTTAGCAGCGAGGCAGATCAGCTTCCAGGAGCAGGAATTGTGGGAAGGCTTTGGCTGCCCAAAGGTCTGTCTGGAAATGTGATTAAGGATTGGGTGGACCGCAGGCGGAAGTCCATCCGTCCGTGGGCCGGCTTTGTTGACCAGCGCAAGTTTTCCAAGCCCCGTAATTTTGGAGAGCTGTGCCAGCGTGTTGTGAGGAACCTGGACACCTATCAGAGCAACTACACCTTCATCTTCATGGCTCTCATCCTCTATTGCATTATCAGTTCTCCAATGCTTTTGATTGCTTTGGGAGTGTTTGCTGGTGCCTTCTATATAATCCACTTGAAAACGCTGGAAAAGAAGCTGGTGGTTTTTGagtttcctccgggtgctccggtttccctcacagtccaaagacatgcgctgcaggagaattggGTCGTGAATTGACTCAGGGACACCAGTTGGGTTTGGCAGGAGGGGTTTCCTTCCCAGTCTTCTGGCTTGCAGGAGCAGGATCCGCTGTCTTCTGGGTTCTAGGTGCTACCCTGGCTGTTATCGGGTCTCATGCTGCGTTTCATGAGCTGGAGTCTCCTGACGTGGATGAGTTGCTCATGGAACCCGTTTAAACCTCTCACCTTTGACCTTTTGCCTCACGTTAACCTCAAATGTCTCCCCTCATCTTTTGTATCAGCACCTGTTGGTTGCACTAATCTAACAATATTAGTTTACTGAACGATTGGCCAGGAAAGACTGTTAAATGGACTGTTAAATGGCCCAGACAGATGAAGCACATTCAAAGACCTTTAAATGCCTTTACTGGTACCTGTTagtttgttacattttatttattttgaaatatcaaAGCACAAGGTAGTAAATGAACTAAGaccatgtaaaaaaatgcagtatAGTCAAACGTTTGAGAGATTCACTTTAAGAATGTTGTAAACTAGTAGCCACTGACATCAGTAATAGGataataaatactatggaagtctaataataataaagaataaataaactcaaacaggatTGGAGCAAAATgatagtgagtaaatgatgacagaattttcatctcTTTAAAGCAGGGCTGCCCAAACCTTTTTTTCATGAAGGGCAAAAACAAAACTTGATTGAGCGTGGTGGGCCGaagctaaatataccaaactCTATTACATTATTTGCCAGGATCACTTActaatttaacaatatttaaaaataaatagaaaaaaa
>TCONS_00020566
ATGGATGCAAAAGTAAGTGACCCCTTTAGCAGCGAGGCAGATCAGCTTCCAGGAGCAGGAATTGTGGGAAGGCTTTGGCTGCCCAAAGGTCTGTCTGGAAATGTGATTAAGGATTGGGTGGACCGCAGGCGGAAGTCCATCCGTCCGTGGGCCGGCTTTGTTGACCAGCGCAAGTTTTCCAAGCCCCGTAATTTTGGAGAGCTGTGCCAGCGTGTTGTGAGGAACCTGGACACCTATCAGAGCAACTACACCTTCATCTTCATGGCTCTCATCCTCTATTGCATTATCAGTTCTCCAATGCTTTTGATTGCTTTGGGAGTGTTTGCTGGTGCCTTCTATATAATCCACTTGAAAACGCTGGAAAAGAAGCTGGTGGTTTTTGagtttcctccgggtgctccggtttccctcacagtccaaagacatgcgctgcaggagaattggGTCGTGAATTGA

Function

symbol description
rabac1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in adaxial cell; cephalic musculature; hypaxial myotome region; myotome; and pectoral fin musculature. Orthologous to human RABAC1 (Rab acceptor 1).

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040625-146 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in adaxial cell; cephalic musculature; hypaxial myotome region; myotome; and pectoral fin musculature. Orthologous to human RABAC1 (Rab acceptor 1).

Ensembl:

ensembl_id ENSDARG00000004171

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020564 False 2263 mRNA 0.37 6 10828787 10837245
TCONS_00020565 False 1290 nonsense_mediated_decay 0.43 7 10829809 10837232
TCONS_00020566 True 456 mRNA 0.50 5 10830672 10834756

Neighbor

gene id symbol gene type direction distance location
XLOC_010475 g6fl coding downstream 281006 10522596 ~ 10547781 (-)
XLOC_010474 abhd16a coding downstream 311817 10477533 ~ 10516970 (-)
XLOC_010472 NA coding downstream 398894 10421170 ~ 10429893 (-)
XLOC_010473 NA coding downstream 400247 10425747 ~ 10428540 (-)
XLOC_010471 si:ch73-54f23.4 coding downstream 424404 10397440 ~ 10404383 (-)
XLOC_010477 NA coding upstream 12461 10849706 ~ 10859614 (-)
XLOC_010478 CU468227.1 coding upstream 79045 10916290 ~ 10916404 (-)
XLOC_010479 NA coding upstream 80339 10917584 ~ 10919434 (-)
XLOC_010480 NA coding upstream 142807 10980052 ~ 11011652 (-)
XLOC_010481 znf526 coding upstream 390001 11227246 ~ 11241424 (-)
XLOC_010626 CR392024.2 misc upstream 10057867 20895112 ~ 20895175 (-)
XLOC_010466 NA non-coding downstream 815182 10012985 ~ 10013605 (-)
XLOC_010461 NA non-coding downstream 1067034 9759176 ~ 9761753 (-)
XLOC_010458 FO704756.1 non-coding downstream 1262416 9564503 ~ 9566371 (-)
XLOC_010482 BX005242.1 non-coding upstream 600624 11437869 ~ 11538821 (-)

Expression


Co-expression Network