CI01000069_01155772_01178120 (RBFOX1)


Basic Information

Item Value
gene id CI01000069_01155772_01178120
gene name RBFOX1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 1155442 ~ 1178120 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_01155772_01178120.mRNA
GGTAATCAAGACGCCCCAGCACCCCCAGAAACCATGGCCCAGCCTTACCCATCGGCCCAGTTCGCTCCCCCTCAGAACGGCATTCCTACTGAGTACACGCCGTCGCACCCTCACCCGACTCCAGACTACCCGGGCCAGACCCCCGTGGCAGAGCACACGCTGAACATGTACCCCCCTGCCCAGACGCACAGTGAGCCCAGCGGACCAGACAACAGCGTACAGGCGGTCTCCGGCACAGCCACAGCAGCAGTCCAGACTGAGAGGCACATAGTTGCAGGGAGCAGCCAGCAGTCATGCGTGGCCAGAGAAAGCGAGAGAAAGCAAGATATAGTGAAGCAGCCATGTCATATATCACCCACAGCTGCCACCCATGCACTACCCCAACCCCTGCAAACGCCGCATTACAAACTACGCCTCAAAGGTTCATTTTTTTGTGTGTGCGTGCTCTACATATGTTTTTCATATCTGCCTGAGAAAGGGAGGCAGGAACAGCAGACAGACGATTCAGCACAGACAGACAGCCAACAGCAAACACAGTCATCTGAAAACACAGAAAACAAAACGCAGCCCAAGAGGCTCCACGTCTCTAACATCCCCTTCAGGTTCAGAGATCCAGACCTCAGGCAAATGTTTGGCCAATTTGGTAAAATCTTAGATGTTGAAATCATATTTAATGAACGAGGATCAAAGGGTTTTGGTTTCGTAACTTTCGAAAATAGTGCCGATGCGGACAGGGCCAGAGAGAAATTACACGGCACGGTGGTAGAAGCTTTTTTATTTTCAATTTTTAAGAGTTATTCGGATGTGACGTGGTGCCGTCTTTCAGTTAACAATGCAACAGCACGGGTAATGACAAATAAAAAGACCGTCAACCCATATGCAAACGGCTGGAAGTTGAATCCAGTCGTGGGTGCAGTCTACAGCCCAGAATTCTATGCAGTTCTCCGGCTGAGAGGAATGAAAGCTATCGGCAGAAGGCTGAGGGATGACCAACGTGCCAGACCCCGCTTGTCTGGCGGACTGATCTCTGATTAAGTGTTACGCCTGACGGAGATTGGGCGGATGTTTGAAAATTAGACTTTCAGCAATTTACGCCCAGAGATTATGCAAATGCAGGCCACCTCTGACCACAGGAAATGTGCGGCTCTTCGCCAAAGACGAAGACATATTCGCTCTCTTTCTTTCTCTATTGCATGCTTTCTTTAAGGAAATGAGTTCACACATGAACAAGGTTAAAAAGATGCAGCTCTAGCAATTATTTTTAAGAAGCCATATACTTTATGCTGTCTGATAACACATCCACTCTTAAAAATAGGCAAACATATAATGGTGTTTCTTTAACTGTGGGCACTTTTAGAAAATAAA

Function

symbol description
rbfox1 Predicted to enable mRNA binding activity. Acts upstream of or within heart contraction; hypothalamus development; and regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleus. Is expressed in digestive system; heart; nervous system; neural keel; and skeletal muscle. Orthologous to human RBFOX1 (RNA binding fox-1 homolog 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14946 RBFOX, FOX; RNA binding protein fox-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_01155772_01178120.mRNA True 1365 mRNA 0.48 9 1155442 1178120

Neighbor

gene id symbol gene type direction distance location
CI01000069_01141607_01144384 NA coding downstream 10621 1141470 ~ 1144821 (-)
CI01000069_01085974_01097576 METTL22 coding downstream 57866 1085650 ~ 1097576 (-)
CI01000069_01052717_01076129 ABAT coding downstream 79313 1052208 ~ 1076129 (-)
CI01000069_01023405_01025613 NA coding downstream 129384 1023342 ~ 1026058 (-)
CI01000069_00983726_00984227 PDE6G coding downstream 171128 983153 ~ 984314 (-)
CI01000069_01410825_01412802 NA coding upstream 232467 1410587 ~ 1413155 (-)
CI01000069_01519314_01531186 FBXL16 coding upstream 341081 1519201 ~ 1531586 (-)
CI01000069_01571371_01593400 GSG1L coding upstream 393251 1571371 ~ 1593400 (-)
CI01000069_01632361_01633951 NA coding upstream 454104 1632224 ~ 1633951 (-)
CI01000069_01645966_01647142 NA coding upstream 466402 1644522 ~ 1647326 (-)
G275179 NA non-coding downstream 31145 1120362 ~ 1124297 (-)
G275198 NA non-coding downstream 123464 1027973 ~ 1031978 (-)
G275169 NA non-coding downstream 135996 1014838 ~ 1019446 (-)
G275175 NA non-coding downstream 152668 999923 ~ 1002774 (-)
G275184 NA non-coding upstream 59867 1237987 ~ 1240609 (-)
G275182 NA non-coding upstream 95320 1273440 ~ 1306881 (-)
G275191 NA non-coding upstream 105371 1283491 ~ 1299129 (-)
G275189 NA non-coding upstream 165316 1343436 ~ 1349224 (-)
G275188 NA non-coding upstream 192936 1371056 ~ 1381154 (-)
CI01000069_00952894_00955774 NA other downstream 199652 952361 ~ 955790 (-)
G275178 NA other downstream 209638 926923 ~ 945804 (-)
CI01000069_00044853_00051264 YPEL1, YPEL3, YPEL2, YPELD, YPELA, YPELC other downstream 1108228 43906 ~ 52896 (-)
CI01000069_02589498_02621318 SYT3 other upstream 1433055 2589469 ~ 2621641 (-)
CI01000069_02997434_03008924 NA other upstream 1810906 2997275 ~ 3008924 (-)
G275699 NA other upstream 1814384 2992504 ~ 3078168 (-)
CI01000069_03415853_03417644 LIMD2 other upstream 2234853 3412973 ~ 3417644 (-)

Expression


Co-expression Network