CI01000069_01916183_01920282


Basic Information

Item Value
gene id CI01000069_01916183_01920282
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 1916183 ~ 1920352 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_01916183_01920282.mRNA
ATTGTAAAAATGGATAGAAACGAGTGTTTCAAAATATTAGTGAAGGAAATGCACAAATATATCAAGATGAGGCACCATCTGTACAACTTAAGGGAACCAGAGGAGGAACCAGGGCCTAGGTCTCTGGATCACCAATTTTCGGGGTCGGTCGGGACCAGGACACACGGACTACAAGAGAAACAACCCAAGGAGAGAAAGGAACGGGGGACCGTGATCATGGTGGGATCAGAGGAGTCGGAAGGAGACGATCTTATATGGATCACGGTGGAAGAAGTGGCAGGAGGGAATAGCCAGCCACCAGCGGTCCAGAGAGAGGAGGAAGGGGCAGGAAGAAAAAGGAAGAGAGGGATGGAAGGTAACAGGGAAAGGATACAGGATGAAGAGGAGAAGGAGGTTGAAGCTGGCGGGGGGTTTTTTGAGGGGGAGGAAGGGGAGGGGGAGGGACAGAGAGTCCCCTTCACAGATAGCTCGGAGAAGGAGCCTCAGAGAAGTCAGGTGGGGGAACTGGTTTGGAAAATAATTGAGGAGGACCAGAGAACTATGAAAGGGATGAGGGAGGTCCCGGAGGATGGTAACCTGTCCAGAAGGGAATGGGAGGCCCTGAAGGGACTGAGGGCAGATAGTTCCTTGATTATTAAGCCAGCAGATAAAGGTAGTTTGGTGGTGGTAATGGATTGGGAGCAATATGTTAGGGAGGCAATGAGGCAACTGGAAGACATGGAATTTTATGAAGAACTACAGAGGCCTATTTACCCAGAGTCGGTTGAGTTGATTAGGAGGGAGCTTGGGCAGTTGCAGGAGGGAGGTTTTTTAAGCTCAAAGCAGGTCCAATACATTAAGAGGCGGGATACTCTGAGAGAGAGGAGACATCCCTCCAGGGAGCTGATCGTGTCAGACTGTGGCAGTGAAAGTTATGGGGTGGCTGAGTTTATCACTTGGTACCTGGGCCCGCTCTCCACCAGGCATACGAGCTATGTCAGGGATATGTATGATTTCCTGGAGAAGGTACAGGCAATAAGAATAAATCCCGATGCCAGTCTCTTCTCCATGAACGTTGAAAGCTTATATACTAATATAGAGATGGAGAGGGGACTAGAGGCAGTCAGGAGATGCCTGCGGAGGTATCCAGAGGAGGGGAGGCCGAATGAGAGTATTCTAAGATTGCTGGAGTTGAGCCTGGTGAGGAATGATTTTGAATTTAATGGACGTTATTTCCTGCAAGTGAAAGGAATGGCTATGGGTAAAAGGTTTGCCCCGGCATATGCTAATATATACATGGCCGATTGGGAGGAATCTGTATTCTCAAAATGCAAATTCAGGTGGACCCACTACTGGAGGTATCTGGACAATGTGTGGGGGGTCTGGGAGGGTACGGAGGGAGACTTCAGGGAGTTTGTGGATACCTTGAATGGTCATCACCCATCCATCTGTGTCAAAGTTAAGAAAAACAAGGACAGAATAAACTTTCTGGACACAACAATTTTTAAGGGACTGGGATTCCAGGACTCCGGGAGACTGGACTCTAAAGACTGCCAAAGGCCTGGCCTCAGGGGTCAGGCGGAATTTTGGCAGGTTGACACAGGACGAGATGCTGGGGGCACGGTACAGGACAGGCCAGCCCTCATCATCTGCTTCACTCTGGCTTCCACGATTCTCAGCCCCCCAAGGAGTTGTGTGTTGATTGGAGGATCTCCAGTAAATTGTAATGTGATTGGTGTAGTGAACTTACTCTTTACCAGCACCACATTCAGCCAGATCCCACTGAGAAACCAGAAAAGTATTACAGAGTGGATACTTGAAAATGAGAGAAGAAGCCTTGTAACTGCTCTGCTGCCTGTCGCTAGGCCTGGAGAGCAGCTCTGCATGTCAGGGATTAGAATTACATACTGCCTGTACAAGAAAAGTCCTTTCATCTAAAACACCAAATTTTGTATAAATTAACATTATAACAATTAGATGTAGATGATACAGAAAGACAAGACATGAA

Function

NR:

description
putative reverse transcriptase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_01916183_01920282.mRNA True 1987 mRNA 0.48 8 1916183 1920352

Neighbor

gene id symbol gene type direction distance location
CI01000069_01742287_01864795 CACNA1I coding upstream 51388 1742287 ~ 1864795 (+)
CI01000069_01661474_01662461 NA coding upstream 253352 1661474 ~ 1662831 (+)
CI01000069_01649266_01653494 ALG1 coding upstream 262486 1649266 ~ 1653697 (+)
CI01000069_01634504_01643721 FLR, TTC30A, TTC30A.S coding upstream 272105 1634184 ~ 1644078 (+)
CI01000069_01454390_01514188 SEPT12 coding upstream 401995 1454390 ~ 1514188 (+)
CI01000069_01945534_01950027 GRAP2A coding downstream 25182 1945534 ~ 1950622 (+)
CI01000069_01951110_01962486 FAM83FA coding downstream 30758 1951110 ~ 1963053 (+)
CI01000069_01974435_01988436 RAC2 coding downstream 53239 1973591 ~ 1988719 (+)
CI01000069_02013637_02015088 SSTR3 coding downstream 93285 2013637 ~ 2016746 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D coding downstream 111602 2031954 ~ 2040427 (+)
G273765 NA non-coding upstream 4739 1909950 ~ 1911444 (+)
G273768 NA non-coding upstream 149772 1744353 ~ 1766411 (+)
G273774 NA non-coding upstream 187652 1706695 ~ 1728531 (+)
G273769 NA non-coding upstream 333793 1570204 ~ 1582390 (+)
G274041 NA non-coding upstream 355203 1560614 ~ 1560980 (+)
G274088 NA non-coding downstream 1783 1922135 ~ 1922496 (+)
G274103 NA non-coding downstream 71785 1992137 ~ 1993190 (+)
G274118 NA non-coding downstream 99526 2019878 ~ 2020085 (+)
G274148 NA non-coding downstream 351708 2272060 ~ 2272789 (+)
G273359 NA other upstream 1437102 477727 ~ 479081 (+)
G274270 NA other downstream 752272 2672624 ~ 2681158 (+)
CI01000069_02894136_02894807 COX6A2 other downstream 972494 2893418 ~ 2894947 (+)
G274603 NA other downstream 1879671 3800023 ~ 3803501 (+)

Expression


Co-expression Network