CI01000069_02065642_02154533 (CACNG2B, CACNG2, CACNG2A)


Basic Information

Item Value
gene id CI01000069_02065642_02154533
gene name CACNG2B, CACNG2, CACNG2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2065642 ~ 2154533 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_02065642_02154533.mRNA
ATGGGTGTGTTTGACCGCGGAGTTCAGATGTTATTGACCACGGTGGGCGCGTTCGCTGCCTTCAGTCTCATGACCATCGCGGTGGGCACGGACTACTGGCTGTACTCGCGCGGCGTGTGTAAGATCAAGACCAACAACGAGAACGAGACCAGCAAGAAGAACGAAGAGGTGATGACCCATTCGGGACTGTGGAGGACATGTTGCTTGGAAGGAAACTTCAAAGGATTGTGTAAGCAGATAGATCACTTTCCAGAAGACACAGATTATGAAGCAGATGCCTCAGAGTACTTCTTACGAGCCGTGCGAGCGTCTAGTATCTTCCCCATCCTCAGCGTCATCCTGCTCTTCATGGGTGGCCTGTGTATAGCTGCCAGCGAGTTCTACAAGTCCCGCCACAATATCATCCTCAGTGCAGGAATCCTCTTTGTGTCTGCAGGCCTCAGTAACATCATTGGCATGATCGTGTACATATCAGCCAATGCGGGGGATCCCTCAAAGAGCGACTCCAAGAAGAACAGCTACTCATACGGCTGGAGTTTCTACTTTGGTGCTTTGTCCTTTATCATGGCTGAAATGGTGGGCGTGCTGGCCGTGCACATGTTCATCGACCGGCACCGGGAGCTGCGGGCGGGCGCGCGGGCCGCAGATTACCTGCAGGGCTCGGCTATCACGCGCATCCCCAGCTACCGGTACCGCTACCGGCGCCGCTCCCGCTCCTCGTCCCGCTCCACAGACCCCTCGCACTCCCGCGACACCTCGCCGGTGGGCTTGAAGGGTTTCGGGGCTTTGCCCTCCACCGAGATCTCCATGTACACACTCACCCGCGGGGGCGACACCCTAAAGGGCAGCCACGGCACCCCCACTGCCACCTACAATTCGGAGAGGGACCACAACTTCCTGCAGGTCCACAACTGCATCCAGAAGGACCTGAAAGACTCATCCCACACTAACACAGCCAACCGACGCACCACCCCTGTA

Function

symbol description
cacng2b Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 10. Orthologous to human CACNG2 (calcium voltage-gated channel auxiliary subunit gamma 2).
cacng2a Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Acts upstream of or within AMPA selective glutamate receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Is expressed in brain and central nervous system. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 10. Orthologous to human CACNG2 (calcium voltage-gated channel auxiliary subunit gamma 2).
cacng2 Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within several processes, including membrane depolarization; membrane hyperpolarization; and neuromuscular junction development. Predicted to be located in endocytic vesicle membrane and plasma membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse; hippocampal mossy fiber to CA3 synapse; and postsynaptic density membrane. Predicted to be integral component of postsynaptic density membrane. Implicated in autosomal dominant non-syndromic intellectual disability 10.

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process

KEGG:

id description
K04867 CACNG2; voltage-dependent calcium channel gamma-2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_02065642_02154533.mRNA True 978 mRNA 0.57 4 2065642 2154533

Neighbor

gene id symbol gene type direction distance location
CI01000069_02033431_02040119 EIF3D.S, EIF3D coding upstream 25215 2031954 ~ 2040427 (+)
CI01000069_02013637_02015088 SSTR3 coding upstream 48896 2013637 ~ 2016746 (+)
CI01000069_01974435_01988436 RAC2 coding upstream 76923 1973591 ~ 1988719 (+)
CI01000069_01951110_01962486 FAM83FA coding upstream 102589 1951110 ~ 1963053 (+)
CI01000069_01945534_01950027 GRAP2A coding upstream 115020 1945534 ~ 1950622 (+)
CI01000069_02228111_02232088 IFI35 coding downstream 73578 2228111 ~ 2232096 (+)
CI01000069_02256234_02263001 NA coding downstream 101636 2256169 ~ 2263121 (+)
CI01000069_02311794_02313206 NA coding downstream 157261 2311794 ~ 2315010 (+)
CI01000069_02393010_02396796 AKT1S1 coding downstream 238477 2393010 ~ 2397732 (+)
CI01000069_02454588_02465668 MYBPC2, MYBPC2A coding downstream 300055 2454588 ~ 2465681 (+)
G274118 NA non-coding upstream 45557 2019878 ~ 2020085 (+)
G274103 NA non-coding upstream 72452 1992137 ~ 1993190 (+)
G274088 NA non-coding upstream 143146 1922135 ~ 1922496 (+)
G273765 NA non-coding upstream 154198 1909950 ~ 1911444 (+)
G273768 NA non-coding upstream 299231 1744353 ~ 1766411 (+)
G274148 NA non-coding downstream 117527 2272060 ~ 2272789 (+)
G274152 NA non-coding downstream 121311 2275844 ~ 2276087 (+)
G274176 NA non-coding downstream 138424 2292957 ~ 2293167 (+)
G274192 NA non-coding downstream 204398 2358931 ~ 2359146 (+)
G273359 NA other upstream 1586561 477727 ~ 479081 (+)
G274270 NA other downstream 518091 2672624 ~ 2681158 (+)
CI01000069_02894136_02894807 COX6A2 other downstream 738313 2893418 ~ 2894947 (+)
G274603 NA other downstream 1645490 3800023 ~ 3803501 (+)
G274619 NA other downstream 1974595 4129128 ~ 4133378 (+)

Expression


Co-expression Network