XLOC_010481 (znf526)


Basic Information

Item Value
gene id XLOC_010481
gene name znf526
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11227246 ~ 11241424 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020568
ATGAAAAGCAATAATCCAGTCAAATGAACGTCAAACTTGGCTGCAGATGAATGGTCGTATGATATTTATTGATGATTAAATTGCCAAAACTGTAAACAAGCACTCTAGCATCCGAAACACCAGTCTCCATCTCGACTGCCTGAGTTTGACAGACAGTTTTCTGTCCAATCACCGCCTGGCTCGAGCCGCACGCGAACCCCCATGGGGCGGGGCTACTAACACAGAGCAAGGAACAGAGGCCAGACAAACGGCACATTTCCACATCCACGATCGTGTTTACGCCAAAATACTCAACAAACAGTGCGTCGCGCTACACAATACCGGTCCGTTGCGGTTAGAAACGCGTTGTGAACACGGGAAAGCTTCAGCGGGACCGACGAGCGCTGCACGAGGGATTGCCCAACTGCAGCGCGCGCGGTGAAGCTCGGAAACGGTTGAGGAAAGAAGGCCTCCTTTCAGCGCTCTTAGACCTGCGGGGAAAAGTGAAGAGCGCCGCCTGACGACCGCCATACAGCGGGGTGGCTTTCGCAGGAGACCGCGGTGCGCTCCACAAGCTCTGGCAAAATCCGAAGAGCGCCGCCAACTGCTCGCCACAAGgtCAATTGGTAGCTTGTGATCGATATCTGGCCGGGTATTGCACACTGAAGGAGTTGACTGAGACTCACTTTGACCCAAGCACTTCATCCGCTTTTCAGCACAAGGACAGTCTTTGCATCTTAAACACTTTGAGTAAAAACAAACTCTGCCATCACCATGAGTGAGCAGGAGTTTGTGGAGCATCAGTACATGTGCAGTGAGTGCCAGCAGCTCTTTAACACCCTCGAGGACGTGCTGGTGCACCAGCAGATCCACACTGGCGCGGAGGAGGTAGAGGTCCTGCCGAGCCTGGAGGACTGTGACCCGACGGAGAGCCAATATCAGTGCCTGGAGTGTGGAGCCATCCTGAGGAACCCAGATGAACTGCTGCTGCATCAGGAGCTGCACATGAGAGAGGCGGGCCAGGAGCTATGCGAGGTCACAGAAGTGGACGCTGTTGATGCAGAAGTGCCAATCCAGTATCAGTGTCTGGAATGCCTGGCTCTTTTTGACACACCTGAACTATGGCtggcacacagacagacacacagcagAAGCAGCACTCATAGTAGCCTGAGCGCCGGCACAgAATATGTCCTTCAGCCTGATGGTTCAGTCACTCCCATTCAGTTGCTCAACGTTCAAAATCTAGTTCTGGATGAACAAAGGGCAGGCCAGATCCTGACCCTAGCCCAGGCACTCCGAGAACAAGAAACCCCATCCAAGGCTGCAGCCCCTCCCAGAACTATGCTAGTACCAGCAAACACTTCCCTGCCTGGCTCCACCTCTGCAATGCTCCGCCTGCAGTTCTGCTCTGCCCAAGCGATTGCTGATGGTTCTGCCCCATCTACTCTCCGCAAAGCAAAACTTCTTAGCCCCCTCTTACCTGCTGAGCCCATCCGGTTGGACAACGTGACCACTTTAAATCTTCTCCCTTCCTCTGGTCAGGTGAATGCAGTTAAGAAGGAAAATGAGGAAATTTTAATCATCCACCCTTACGAGTGTTCCGAGTGTAATCTGCTGTTCAGTACACCAGAGGATTTCCTCCAACACCAGGGGGAACACTTCTTAGGCCAGGACAAAGAGACTGGGGACACTGGGGTGATGGTGGGGTATGAAGACAGTTTGGGAGCAAAGGATGATGAAGGAAGAAGTGATGGATCAGAAGAAGGCAAAGTTGGCAGAGTTAGTGGTGGGAGGCGCATGTACACCGCCCGCTCAGCTGGTTTGGGTTTGACATCACCTGTCTCACCAAGCAGTCTTCGGTGTGAAGAGTGCAATAGAACATTCACCTCTGCCAATCGGCTTGTTGCACACCTTCGTGTGCATGAACAAGGAACCCATGAGTGTCCAGAGTGTGACAAAGTGTTTAAGAAGTTAGTGTCCCTTCAGACGCACATGCGCACACACTCAGGTGAGGCACGTTTTCTCTGTGTGGACTGCGGACATGGATTTACCACTGAAATGACTCTCATGATACACAGGAAATCCCACACATCTGAGCCACTGCACAAATGCCCATTTTGTGCTAAAACTTTCACCAACATGACAAAGTTCTTGTACCACCGCCGCACTCACAGAGTACGCGAGCCAACCACTCCAGTCTCTCAGTTTGTACTGGCACAGCAGTCACCCGTCTCTATCATCCAAAGAGCAAGAGAACGAGAGGCTGCTTGGAGAAAAGACAGACAGGTGCTGACAATTCCTTCTAAGGATGAGTCCAGTGATGCAGGTCCAGTGCTCATTGAAGGTATTACTGTGGTCTCCCAGTCTACAGAACCAACAGAAAATGGGCTTTATGTTGAACCCTCAAACACAGAACAAACTCAAAATGGAGGGAAAAGGCTGGCAGATGACCCCAATTATTTAACGATTGCCAAAAGTGAAGGAGGTGGAGTCGAAGATAAACGCATGGTTCCGGCTGCTGAGGAAGATCCAAAGTTCCCTTGCTCTATTTGTGGAAAAAGATTCTCCTCGCAGGTCCGTTTGTTGCGCCATCGACGTACGACTCATACGACTGAAAGGCGCTTCAAATGCAACATCTGTGGGAAACCATTCAAGAAGCAAATCCATCTGCGGAAccacctgcgcacacacacaggggaACGACCGTTCCAGTGCAGCGTGTGTGGAAAGACCTTTTCCTCTCTTGCTAATCTTTCCCGTCATGGACTCACACACACAGGAGTCCGTCCGTACCGCTGTGACATTTGCCACAAAGCCTTCAGCCAATCCTCAAATCTACGTCAGCACCGTCAACATCTTCACAGCAATGTGACACCCTCATCGTGTCCAGACTGCTCTGCGACTTTTATCCGTCCTGCTAAACTCGTAGCTCATCGATTCCTTCATCATCCAGGGTCACCGGCCCCTTACCCCTGTCCACACTGTACAGAGGGGTTCCTGCGCAAACGTCAGCGAGACGTACATTGTCTGGAGGAGCATCCCTGCTTGGCACAACCCCACAGCATTTCTCAGGAGTCTCAAGGCAGGGGTCAGGAAGGTTCGGCCGATGATACTGAGCAGCAAAGTGCTTCTTCAATACCAAAACCCAACCTAGATTGCACTATTTGTGGTAAGCGCTTGAACTCTCCTGCGAATCTTCGCCTACACCAACTGAGTCATGGTCTCGGGCCTGGCCGGCCACGAGGCTCCAGCTCTAACACTGGGAAGTCTCATCCCTGTCCAGTCTGCGGAAAACTGTTCGTTTCTGCCTCAAGTGTTACCCTACACCAGAGAGTTCACACCGGTGAGCGTCCGTATCCTTGTGCAATCTGTGGAAAACGGTTTCGCCAGAACACGCACCTGCGGGAACACCTTCGCACACATTCAGGCGAGCGTCCGTTCCGATGTGAGTTCTGCGATAAGGGCTTTGTTCAAAGCATGCATCTGGCAGAACACCGGCGAACGCATACGGGTGAGCGGCCGCATGCTTGTGGTGAATGTGGAAAGACCTTCAAGACTATCTCAAACCTTAGGACCCATCGTAAAACCCACTCTCGCTCTCAAAAGCAACAAGAGTCGGAACACAGTGGAGAATTGTCAgccacaggaacaaacacagtAGCTGTTGCTGTTTTGGAGGCTTCAGAGATGGACCTGGCAAACTCTGTACCAGACTTCGGCCAACAGGGGGTCCAGCTTGGACAGCCACAAGTCATTCAGATACAGACATCTAACCTGACACAGACTCCGGGCACTCCTACCATCATGTGTAATGAGTTTGGAGAGACTATAGCCATCATTGAGACAAGTGGAGATCTAACAGAGGCCATCGAGCTCTACCGCACAGCACTGGAGGGCGGTATCAACATGGAGGCCATCACTGTGGACAACCTGCAGTTAATGTGAAGCATTGACAGTGCAGCATTCCAAGCAGGAGATTCGAAGATCACAGTTATACGCTGAGAGAAAAAGATGTCAGATGCTTTGGAAGAAGTGTAGAGAGACATTCAAAAATAAAAGCAGAGAATGAATTCGAGCTTCTGAGATCTTGAGTTTTGCAAATGCAAGGAATCGTATTAAGTTCTTGAATGTGTCAACAAGTGTACCTCAGAGAGCCACTCTTGTCCTTCCTTTCAAATGCTTTTTCAGCCATTTTTTGCAAAATAACATTGACTGACTTCAAAGAGGGCTGATTTTTGAAGACGCAACTGACAGACTTAAGATGGCTCCTTAATTGGGGCTAGAAATGGGTTGTTGCCAACGACACACTGAATGACTTATTCTTACATTTGGAGGCCAGCAAGGTACAGGTTACATAAGTAAAGAGTTTGGACAGTGAAGCAAGTTGTAATGACTCTCCGTTTACATTTTGATCTGCAGTTCTTTAAAGGCGGTAGTTTAAGGGCATTGAGCTGTAGAACAGAACAGGGAAGGAGGAGATATAGACATGCTTATTACAGAAGACAAAATATGCACCATCACTTACCATGGAGTAAGAATCCTCCTGTTACATGTACCACATCTCGGCCTGCACATTGTATGTTTgtagcatttttttattgttatgctCATTTGGAGAAGTGTTGGAAATAAACTGTTTGTCTCT
>TCONS_00020569
ATGAGTGAGCAGGAGTTTGTGGAGCATCAGTACATGTGCAGTGAGTGCCAGCAGCTCTTTAACACCCTCGAGGACGTGCTGGTGCACCAGCAGATCCACACTGGCGCGGAGGAGGTAGAGGTCCTGCCGAGCCTGGAGGACTGTGACCCGACGGAGAGCCAATATCAGTGCCTGGAGTGTGGAGCCATCCTGAGGAACCCAGATGAACTGCTGCTGCATCAGGAGCTGCACATGAGAGAGGCGGGCCAGGAGCTATGCGAGGTCACAGAAGTGGACGCTGTTGATGCAGAAGTGCCAATCCAGTATCAGTGTCTGGAATGCCTGGCTCTTTTTGACACACCTGAACTATGGCtggcacacagacagacacacagcagAAGCAGCACTCATAGTAGCCTGAGCGCCGGCACAgAATATGTCCTTCAGCCTGATGGTTCAGTCACTCCCATTCAGTTGCTCAACGTTCAAAATCTAGTTCTGGATGAACAAAGGGCAGGCCAGATCCTGACCCTAGCCCAGGCACTCCGAGAACAAGAAACCCCATCCAAGGCTGCAGCCCCTCCCAGAACTATGCTAGTACCAGCAAACACTTCCCTGCCTGGCTCCACCTCTGCAATGCTCCGCCTGCAGTTCTGCTCTGCCCAAGCGATTGCTGATGGTTCTGCCCCATCTACTCTCCGCAAAGCAAAACTTCTTAGCCCCCTCTTACCTGCTGAGCCCATCCGGTTGGACAACGTGACCACTTTAAATCTTCTCCCTTCCTCTGGTCAGGTGAATGCAGTTAAGAAGGAAAATGAGGAAATTTTAATCATCCACCCTTACGAGTGTTCCGAGTGTAATCTGCTGTTCAGTACACCAGAGGATTTCCTCCAACACCAGGGGGAACACTTCTTAGGCCAGGACAAAGAGACTGGGGACACTGGGGTGATGGTGGGGTATGAAGACAGTTTGGGAGCAAAGGATGATGAAGGAAGAAGTGATGGATCAGAAGAAGGCAAAGTTGGCAGAGTTAGTGGTGGGAGGCGCATGTACACCGCCCGCTCAGCTGGTTTGGGTTTGACATCACCTGTCTCACCAAGCAGTCTTCGGTGTGAAGAGTGCAATAGAACATTCACCTCTGCCAATCGGCTTGTTGCACACCTTCGTGTGCATGAACAAGGAACCCATGAGTGTCCAGAGTGTGACAAAGTGTTTAAGAAGTTAGTGTCCCTTCAGACGCACATGCGCACACACTCAGGTGAGGCACGTTTTCTCTGTGTGGACTGCGGACATGGATTTACCACTGAAATGACTCTCATGATACACAGGAAATCCCACACATCTGAGCCACTGCACAAATGCCCATTTTGTGCTAAAACTTTCACCAACATGACAAAGTTCTTGTACCACCGCCGCACTCACAGAGTACGCGAGCCAACCACTCCAGTCTCTCAGTTTGTACTGGCACAGCAGTCACCCGTCTCTATCATCCAAAGAGCAAGAGAACGAGAGGCTGCTTGGAGAAAAGACAGACAGGTGCTGACAATTCCTTCTAAGGATGAGTCCAGTGATGCAGGTCCAGTGCTCATTGAAGGTATTACTGTGGTCTCCCAGTCTACAGAACCAACAGAAAATGGGCTTTATGTTGAACCCTCAAACACAGAACAAACTCAAAATGGAGGGAAAAGGCTGGCAGATGACCCCAATTATTTAACGATTGCCAAAAGTGAAGGAGGTGGAGTCGAAGATAAACGCATGGTTCCGGCTGCTGAGGAAGATCCAAAGTTCCCTTGCTCTATTTGTGGAAAAAGATTCTCCTCGCAGGTCCGTTTGTTGCGCCATCGACGTACGACTCATACGACTGAAAGGCGCTTCAAATGCAACATCTGTGGGAAACCATTCAAGAAGCAAATCCATCTGCGGAAccacctgcgcacacacacaggggaACGACCGTTCCAGTGCAGCGTGTGTGGAAAGACCTTTTCCTCTCTTGCTAATCTTTCCCGTCATGGACTCACACACACAGGAGTCCGTCCGTACCGCTGTGACATTTGCCACAAAGCCTTCAGCCAATCCTCAAATCTACGTCAGCACCGTCAACATCTTCACAGCAATGTGACACCCTCATCGTGTCCAGACTGCTCTGCGACTTTTATCCGTCCTGCTAAACTCGTAGCTCATCGATTCCTTCATCATCCAGGGTCACCGGCCCCTTACCCCTGTCCACACTGTACAGAGGGGTTCCTGCGCAAACGTCAGCGAGACGTACATTGTCTGGAGGAGCATCCCTGCTTGGCACAACCCCACAGCATTTCTCAGGAGTCTCAAGGCAGGGGTCAGGAAGGTTCGGCCGATGATACTGAGCAGCAAAGTGCTTCTTCAATACCAAAACCCAACCTAGATTGCACTATTTGTGGTAAGCGCTTGAACTCTCCTGCGAATCTTCGCCTACACCAACTGAGTCATGGTCTCGGGCCTGGCCGGCCACGAGGCTCCAGCTCTAACACTGGGAAGTCTCATCCCTGTCCAGTCTGCGGAAAACTGTTCGTTTCTGCCTCAAGTGTTACCCTACACCAGAGAGTTCACACCGGTGAGCGTCCGTATCCTTGTGCAATCTGTGGAAAACGGTTTCGCCAGAACACGCACCTGCGGGAACACCTTCGCACACATTCAGGCGAGCGTCCGTTCCGATGTGAGTTCTGCGATAAGGGCTTTGTTCAAAGCATGCATCTGGCAGAACACCGGCGAACGCATACGGGTGAGCGGCCGCATGCTTGTGGTGAATGTGGAAAGACCTTCAAGACTATCTCAAACCTTAGGACCCATCGTAAAACCCACTCTCGCTCTCAAAAGCAACAAGAGTCGGAACACAGTGGAGAATTGTCAgccacaggaacaaacacagtAGCTGTTGCTGTTTTGGAGGCTTCAGAGATGGACCTGGCAAACTCTGTACCAGACTTCGGCCAACAGGGGGTCCAGCTTGGACAGCCACAAGTCATTCAGATACAGACATCTAACCTGACACAGACTCCGGGCACTCCTACCATCATGTGTAATGAGTTTGGAGAGACTATAGCCATCATTGAGACAAGTGGAGATCTAACAGAGGCCATCGAGCTCTACCGCACAGCACTGGAGGGCGGTATCAACATGGAGGCCATCACTGTGGACAACCTGCAGTTAATGTGA
>TCONS_00021786
GGGCGGGGCTACTAACACAGAGCAAGGAACAGAGGCCAGACAAACGGCACATTTCCACATCCACGATCGTGTTTACGCCAAAATACTCAACAAACAGTGCGTCGCGCTACACAATACCGGTCCGTTGCGGTTAGAAACGCGTTGTGAACACGGGAAAGCTTCAGCGGGACCGACGAGCGCTGCACGAGGGATTGCCCAACTGCAGCGCGCGCGGTGAAGCTCGGAAACGGTTGAGGAAAGAAGGCCTCCTTTCAGCGCTCTTAGACCTGCGGGGAAAAGTGAAGAGCGCCGCCTGACGACCGCCATACAGCGGGGTGGCTTTCGCAGGAGACCGCGGTGCGCTCCACAAGCTCTGGCAAAATCCGAAGAGCGCCGCCAACTGCTCGCCACAAGgtCAATTGGTAGCTTGTGATCGATATCTGGCCGGGTATTGCACACTGAAGGAGTTGACTGAGACTCACTTTGACCCAAGCACTTCATCCGCTTTTCAGCACAAGGACAGTCTTTGCATCTTAAACACTTTGAGTAAAAACAAACTCTGCCATCACCATGAGTGAGCAGGAGTTTGTGGAGCATCAGTACATGTGCAGTGAGTGCCAGCAGCTCTTTAACACCCTCGAGGACGTGCTGGTGCACCAGCAGATCCACACTGGCGCGGAGGAGGTAGAGGTCCTGCCGAGCCTGGAGGACTGTGACCCGACGGAGAGCCAATATCAGTGCCTGGAGTGTGGAGCCATCCTGAGGAACCCAGATGAACTGCTGCTGCATCAGGAGCTGCACATGAGAGAGGCGGGCCAGGAGCTATGCGAGGTCACAGAAGTGGACGCTGTTGATGCAGAAGTGCCAATCCAGTATCAGTGTCTGGAATGCCTGGCTCTTTTTGACACACCTGAACTATGGCtggcacacagacagacacacagcagAAGCAGCACTCATAGTAGCCTGAGCGCCGGCACAGTGAGTACAGAAATATTCAGAGTCGCATTTGGATCTGCTTTTGGTTTGATTTGATTCCATTGGGTTCCGGTTCATTTGGGAATGTTCCAATTGTAAAGTACATTTAGGGGTGAATGAAATTCTAATCAGTTTTTCAATTTGGTTTATTAGgaaattgttcatttaaaaatagcaacaggGACAAAACTAGTTAAAGAGatg

Function

symbol description
znf526 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF526 (zinc finger protein 526) and ZNF574 (zinc finger protein 574).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-260 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF526 (zinc finger protein 526) and ZNF574 (zinc finger protein 574).

Ensembl:

ensembl_id ENSDARG00000077143

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020568 False 4627 mRNA 0.50 8 11227246 11241424
TCONS_00020569 False 3174 mRNA 0.52 7 11227946 11235572
TCONS_00021786 True 1161 lncRNA 0.52 3 11234889 11241220

Neighbor

gene id symbol gene type direction distance location
XLOC_010480 NA coding downstream 215594 10980052 ~ 11011652 (-)
XLOC_010479 NA coding downstream 307812 10917584 ~ 10919434 (-)
XLOC_010478 CU468227.1 coding downstream 310842 10916290 ~ 10916404 (-)
XLOC_010477 NA coding downstream 367632 10849706 ~ 10859614 (-)
XLOC_010476 rabac1 coding downstream 390001 10828787 ~ 10837245 (-)
XLOC_010482 BX005242.1 coding upstream 196445 11437869 ~ 11538821 (-)
XLOC_010483 NA coding upstream 355960 11597384 ~ 11639472 (-)
XLOC_010484 zgc:158701 coding upstream 519178 11760602 ~ 11779661 (-)
XLOC_010485 tlr21 coding upstream 544543 11785967 ~ 11789108 (-)
XLOC_010486 cnfn coding upstream 549216 11790640 ~ 11798994 (-)
XLOC_010626 CR392024.2 misc upstream 9653688 20895112 ~ 20895175 (-)
XLOC_010472 NA non-coding downstream 797353 10421170 ~ 10429893 (-)
XLOC_010491 NA non-coding upstream 751142 11992566 ~ 12005084 (-)
XLOC_010492 CU467865.1 non-coding upstream 770650 12012074 ~ 12012188 (-)
XLOC_010497 CR388102.3 non-coding upstream 997983 12239407 ~ 12239460 (-)

Expression


Co-expression Network