CI01000069_02894136_02894807 (COX6A2)


Basic Information

Item Value
gene id CI01000069_02894136_02894807
gene name COX6A2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2893418 ~ 2894947 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_02894136_02894807.mRNA
GTATAAAGAGACCATACAAAGTTTACATGGACGTAATGGAGATTCTTGTCGAGATTGGTCATTATTTGACCTTAGACTTTTTCATCACCTTTGCTTTGACCTACTGTTCAAAACCGCAGTAAAAGTGTAAACTTTTTTCTGCCATGCTTCCGTTTTCACAATATAATACAAGTTTATGTTAACAAATATCACTGAGACTTACACAGTTGACATTTCATGGTTGTTAGAAGTACAAAGTTGTTAGATTTGACTTTTGCACAACTTCTCTAGCATAAAAGAATCTTTAGCACTTTTTATCCGTAATATTGTGAATTTTTATAAAAAGTTAAATTAGTACTTTCAGCAAATTAATACTTTGACTAATACTACTCAGCAAGGATGCTTTAAATTGATAAAAAGTGATTTAAGATACATTTAAGATGACATTCGTGCATTAGCCTATGTTACAAATGATTTCTGTTTCAAATAATTGTTTTTTTTAACTTTCTTTTTTTCAAAGAACCTTTACAAAATGGATCAGTTTCCAAAAAAATATTAAACAGCAAAGTGTATATATATATATATATATATATATATATATACACACACACACACATTTTATATATATATATATATATATATATATATATATATATACACACACACACACACACACACATATATATATAAATACACATATATATAAAATGAAGTCTTGCTTCGTGTCTTTGCTTCAGAAATGGCGTTGTCGCCGACTGCTATGGTGGCCCGTCGGGCTCTCGCGGCTGCATCACAAGGGAGCCATGAAGGAGGAGCAAGGACCTGGAAGATCCTGTCCTTCGTATTGGCCCTGCCCGGTGTGGGTGTCTGCATGGCAAACGCTTACATGAAGATGCAGGCCCATTCCCATGACACCCCAGAGTTTGTGCCATACCCACACCTCCGCATTCGAACCAAGCCATGGCCCTGGGGTGATGGGAATCACTCCCTCTTCCACAACTCTCATACAAACCCTCTGCCCACCGGTTATGAGGGATCTCACCACTGAGCAGGACACCCCCTGCTGTCCGACACAGATGCCAATCAACACAGTCTCCATTCAGCAGCGACCGACTGCCATGCTTTTAACATTTTTAACAGACATAAACAACTGTTTTCACATGAATTCCTTGTATCTGGTCACAAGCA

Function

symbol description
cox6a2 Predicted to enable enzyme regulator activity. Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex IV. Is expressed in brain; gill; heart; liver; and skeletal muscle. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease recessive intermediate D and cytochrome-c oxidase deficiency disease. Orthologous to several human genes including COX6A2 (cytochrome c oxidase subunit 6A2).

GO:

id name namespace
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02266 COX6A; cytochrome c oxidase subunit 6a

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_02894136_02894807.mRNA False 1167 mRNA 0.37 3 2893418 2894947

Neighbor

gene id symbol gene type direction distance location
CI01000069_02862381_02864927 PRF1.1 coding upstream 28425 2861654 ~ 2864993 (+)
CI01000069_02857196_02860525 NA coding upstream 32856 2856422 ~ 2860562 (+)
CI01000069_02818349_02821933 CLDNI coding upstream 71481 2818240 ~ 2821937 (+)
CI01000069_02540591_02547912 NA coding upstream 345396 2540510 ~ 2548022 (+)
CI01000069_02466489_02467309 NA coding upstream 426021 2465780 ~ 2467397 (+)
CI01000069_02903983_02905418 NA coding downstream 9036 2903983 ~ 2905654 (+)
CI01000069_02927711_02933564 NA coding downstream 32490 2927437 ~ 2933579 (+)
CI01000069_02982693_02987269 CLEC19A coding downstream 87616 2982563 ~ 2987527 (+)
CI01000069_02991356_02994073 NA coding downstream 95165 2990112 ~ 2994319 (+)
CI01000069_03105942_03125404 C1QL1 coding downstream 210995 3105942 ~ 3125613 (+)
G274414 NA non-coding upstream 3445 2889763 ~ 2889973 (+)
G274412 NA non-coding upstream 10848 2879639 ~ 2882570 (+)
G274356 NA non-coding upstream 37821 2853420 ~ 2855597 (+)
G274403 NA non-coding upstream 48249 2844730 ~ 2845169 (+)
G274399 NA non-coding upstream 53376 2834707 ~ 2840042 (+)
G274433 NA non-coding downstream 111302 3006249 ~ 3008232 (+)
G274355 NA non-coding downstream 186548 3081495 ~ 3081791 (+)
G274467 NA non-coding downstream 205828 3100775 ~ 3101359 (+)
G274468 NA non-coding downstream 208352 3103299 ~ 3104275 (+)
G274495 NA non-coding downstream 267979 3162926 ~ 3163201 (+)
G274270 NA other upstream 212260 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 721225 2031954 ~ 2040427 (+)
G273359 NA other upstream 2414337 477727 ~ 479081 (+)
G274603 NA other downstream 905076 3800023 ~ 3803501 (+)
G274619 NA other downstream 1234181 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 1660362 4555269 ~ 4558480 (+)
G274953 NA other downstream 2029520 4924467 ~ 4926687 (+)

Expression


Co-expression Network