CI01000069_03375220_03376645 (LY6E)


Basic Information

Item Value
gene id CI01000069_03375220_03376645
gene name LY6E
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3375008 ~ 3376807 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_03375220_03376645.mRNA
CTATATAATCGAACACACACTTGCAGTTTACCAGACACACTGACACCACGTATATTTTTGCTTCAAAAGGAGTTTGCTAAAGCTGAAACCATGAAGGCTCTGGTTTGCACTCTTGTTCTGATGCTCGTGTGCAGCACTACTGTGCACTCTCTGCAGTGCTATACCTGTGTGGGTGACGACTGCAAGGTCAGAACTGAATGCCCTCCATCTGCCAACTTCTGCAGGACCGAGGCCACCGCTACTTTTTTGTCTCGTACATGTGAGGAGTTCTGCACACCTGGGGACAATGTCCACTGCTGCGACCAAGACTTGTGCGGCTGAACGTCTCGGGCCAGTTTTTGAAAAGTCTTGCGTTGCATGACGTATCATTTATTAATTACTAATCAACCAATTTAAAATGAGATCACTCACCATTATAACCAAAATGTGATGAGCATGAGCAATGCAAAAATTCA
>TU311501
GTTTATTGCAATTTCTAGCCAATAGCAATATTTTAGCCCCAAGGTCCCTATAATAATCCTGTACTGCAGCATACCTATCATGCCGTACTCTCAGCAAAACCGGTTTCAATTTAGCAAGCAGACTATATAATCGAACACACACTTGCAGTTTACCAGACACACTGACACCACGTATATTTTTGCTTCAAAAGGAGTTTGCTAAAGCTGAAACCATGAAGGCTCTGGTTTGCACTCTTGTTCTGATGCTCGTGTGCAGCACTACTGTGCACTCTCTGCAGTGCTATACCTGTGTGGGTGACGACTGCAAGGTCAGAACTGAATGCCCTCCATCTGCCAACTTCTGCAGGACCGAGGCCACCGCTACTTTTTTGTCTCGTACATGTGAGGAGTTCTGCACACCTGGGGACAATGTCCACTGCTGCGACCAAGACTTGTGCGGCTGAACGTCTCGGGCCAGTTTTTGAAAAGTCTTGCGTTGCATGACGTATCATTTATTAATTACTAATCAACCAATTTAAAATGAGATCACTCACCATTATAACCAAAATGTGATGAGCATGAGCAATGCAAAAATTCAATAAAGCCTCTTTGAATATGTGTCTGTA

Function

symbol description
ly6e Predicted to enable acetylcholine receptor inhibitor activity. Involved in negative regulation of viral entry into host cell. Predicted to be located in extracellular region. Predicted to be active in plasma membrane. Predicted to be anchored component of membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_03375220_03376645.mRNA False 455 mRNA 0.45 3 3375130 3376779
TU311501 True 605 lncRNA 0.43 3 3375008 3376807

Neighbor

gene id symbol gene type direction distance location
CI01000069_03306832_03309710 BRAFLDRAFT_264459, MGC82392, GDF8, DCAF7 coding upstream 65420 3306417 ~ 3309710 (+)
CI01000069_03293097_03294020 NA coding upstream 80990 3293030 ~ 3294140 (+)
CI01000069_03292108_03292508 NA coding upstream 82346 3292108 ~ 3292784 (+)
CI01000069_03273461_03285388 MYLK5 coding upstream 88787 3273461 ~ 3286343 (+)
CI01000069_03250683_03252335 FZD2.S, FZD2 coding upstream 122345 3250683 ~ 3252785 (+)
CI01000069_03465840_03471086 STRADA coding downstream 89061 3465840 ~ 3471867 (+)
CI01000069_03479877_03487573 SNRNP70 coding downstream 103098 3479877 ~ 3487771 (+)
CI01000069_03488885_03492635 LIN7B coding downstream 112106 3488885 ~ 3492746 (+)
CI01000069_03496673_03500800 NA coding downstream 119894 3496673 ~ 3500895 (+)
CI01000069_03509187_03563871 KCNC3A coding downstream 132123 3508902 ~ 3564360 (+)
G274555 NA non-coding upstream 3110 3370388 ~ 3372020 (+)
G274553 NA non-coding upstream 6556 3362083 ~ 3368574 (+)
G274579 NA non-coding upstream 16221 3358679 ~ 3358909 (+)
G274577 NA non-coding upstream 17845 3357070 ~ 3357285 (+)
G274545 NA non-coding upstream 44000 3326014 ~ 3331130 (+)
G274588 NA non-coding downstream 35449 3412228 ~ 3412472 (+)
G274589 NA non-coding downstream 35721 3412500 ~ 3412770 (+)
G274592 NA non-coding downstream 44119 3420898 ~ 3422504 (+)
G274564 NA non-coding downstream 75785 3452564 ~ 3456210 (+)
G274601 NA non-coding downstream 281451 3658230 ~ 3658435 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 480242 2893418 ~ 2894947 (+)
G274270 NA other upstream 693972 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 1202937 2031954 ~ 2040427 (+)
G273359 NA other upstream 2896049 477727 ~ 479081 (+)
G274603 NA other downstream 423244 3800023 ~ 3803501 (+)
G274619 NA other downstream 752349 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 1178530 4555269 ~ 4558480 (+)
G274953 NA other downstream 1547688 4924467 ~ 4926687 (+)

Expression


Co-expression Network