CI01000069_03474790_03478425 (RNF113A)


Basic Information

Item Value
gene id CI01000069_03474790_03478425
gene name RNF113A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3474790 ~ 3478425 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_03474790_03478425.mRNA
ATGGCGGAGTCAGAAGAGCCTAAAACAACCTGCAAGTTTCTTTTTAAGAAATCAAACAAGAAATTTTCTGCACGGAAAAGAAATGCAAGTGATAGCGATAAAGACAGGAGTAGCGGCGAGGAGGGCAGTGCTGTGGTCAGAAAGAAGAAAGCTGCTATTACGAACCCCATGATTCAGAAAACAAAGAAAGTGGAGAAGGAAGTAGTCTCATCAAGTGAAAGTGAAGAGGAGAAACAAGACAAGAGTGTCACTGTCGCTTACAAGTCGACTCGGTCAGCGAAACCAGAGGGACCGGATGACATGGGGGCCACTGCTGTTTATGAGTTGGACACAGAGAGGGACAAAGATGCTCAGGCCATATTTGAGCGCAGCCAGAAGATTCAAGAGGAGTTGACTGGTAAAGAAGACGATAAGATTTATCGTGGCATCAACAACTACCACAAATTCATTAAACCCAAAGATTCCACCATGGGCAATGCCTCCTCTGGTATGGTCAGGAAAGGACCAATTAGAGCCCCTGAGCACCTCAGGGCCACAGTCCGGTGGGATTACCAGCCTGACATTTGTAAAGACTATAAAGAGACGGGCTTCTGCGGCTTCGGAGACAGCTGTAAGTTTCTGCATGACCGTTCAGACTACAAGCATGGCTGGCAGATTGAGCGAGAGCTTGAAGAAGGAAGATATGGGGCAAACG

Function

symbol description
rnf113a Predicted to enable metal ion binding activity. Predicted to be involved in snoRNA splicing. Predicted to be part of U2-type spliceosomal complex. Human ortholog(s) of this gene implicated in nonphotosensitive trichothiodystrophy 5. Orthologous to several human genes including RNF113A (ring finger protein 113A).

GO:

id name namespace
GO:0034247 snoRNA splicing biological_process

KEGG:

id description
K13127 RNF113A, CWC24; RING finger protein 113A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_03474790_03478425.mRNA True 694 mRNA 0.47 7 3474790 3478425

Neighbor

gene id symbol gene type direction distance location
CI01000069_03444473_03455791 NA coding downstream 17034 3444392 ~ 3457756 (-)
CI01000069_03441535_03443377 NA coding downstream 31390 3441270 ~ 3443400 (-)
CI01000069_03433325_03435163 NA coding downstream 39515 3433287 ~ 3435275 (-)
CI01000069_03430311_03432182 NA coding downstream 42583 3430283 ~ 3432207 (-)
CI01000069_03415853_03417644 LIMD2 coding downstream 57146 3412973 ~ 3417644 (-)
CI01000069_03506556_03507031 NA coding upstream 27830 3506255 ~ 3507557 (-)
CI01000069_03565665_03568486 NA coding upstream 87115 3565540 ~ 3568486 (-)
CI01000069_03571631_03573352 NA coding upstream 93110 3563293 ~ 3576335 (-)
CI01000069_03578433_03584741 BAXB coding upstream 100008 3578433 ~ 3585231 (-)
CI01000069_03667639_03669979 NA coding upstream 189195 3667620 ~ 3669979 (-)
G275878 NA non-coding downstream 114089 3360488 ~ 3360701 (-)
G275876 NA non-coding downstream 117369 3357221 ~ 3357421 (-)
G275772 NA non-coding downstream 161894 3306489 ~ 3312896 (-)
G275814 NA non-coding downstream 190599 3280912 ~ 3284191 (-)
G275856 NA non-coding downstream 213286 3261296 ~ 3261504 (-)
G275750 NA non-coding upstream 117296 3595721 ~ 3627754 (-)
G275826 NA non-coding upstream 129027 3607452 ~ 3614839 (-)
G275754 NA non-coding upstream 134328 3612753 ~ 3636263 (-)
G275828 NA non-coding upstream 135893 3614318 ~ 3633114 (-)
G275920 NA non-coding upstream 258229 3736654 ~ 3736958 (-)
G275699 NA other downstream 396622 2992504 ~ 3078168 (-)
CI01000069_02997434_03008924 NA other downstream 474357 2997275 ~ 3008924 (-)
CI01000069_02589498_02621318 SYT3 other downstream 844474 2589469 ~ 2621641 (-)
CI01000069_01645966_01647142 NA other downstream 1827464 1644522 ~ 1647326 (-)
CI01000069_03768812_03787588 BRSK1 other upstream 287248 3765673 ~ 3787588 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other upstream 326191 3804616 ~ 3807180 (-)
CI01000069_04932463_04940554 NA other upstream 1461096 4932144 ~ 4941471 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location