CI01000069_03839830_03843013 (RRAS)


Basic Information

Item Value
gene id CI01000069_03839830_03843013
gene name RRAS
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3839830 ~ 3843569 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_03839830_03843013.mRNA
ATGTCAACAGAAGAAAGATATAAGTTGGTGGTCGTGGGCGGTGGAGGTGTGGGGAAAAGCGCCCTCACTATTCAGTTCATTCAGTCGTACTTTGTGTCTGACTATGACCCAACCATTGAAGACTCGTACACTAAAACCTGCACCGTGGATGGAAAGGAGGCACGATTAGACATCCTCGACACAGCAGGACAAGAAGAGTTTGGAGCGATGAGAGAGCAGTACATGCGCTCTGGAGAGGGCTTCTTACTGGTGTTTGCTCTTAATGACAGTGGCAGTTATAAAGAAATTCAGAAATTTCACACTCAGATATTGCGGGTGAAGGATCGAGATGACTTTCCCATGGTTCTTGTTGGCAACAAATCCGATCTTGACCAGCAGAGAGAGATCTCAAGAGAGGAGGCCATGTCATTTGCCCGAGAAAACCGGATCCACTATATGGAATCGTCAGCTAAGAACCGCCACAATGTGGATGAAGCCTTCATGGAGGTTGTGCGAGCAATAAGGAAGTTTCAGGAGACGGAGAGTCCACCACTCCCCGCTAATCACGCGAGGAAGCAGAAGAGTGGTACTTCTGTTTGTGCTTATGTTCAGAATAAGGTCAGTCTGTCTCCAGTTTCAAGTTATCGTATATGACATGCTTTGCTTGTGATTTTTGCACCTTCATTGGTAAACTGATGAAAAAGTGATACAGAGGAATTGCCAAATGAATTGACTAACAAAGCATGATATTAATCAGTGTTGTGAGGGAGTGAGTCACACTGTCTGTACATAAGTAGAATGGCTTAGTTTATAGGGTGAGGAAAAACAAGACTAGGTGCTTTTCCTTAGTCACACTATAGCAGTTCTTATGGTATACTCGACCCTCGAGGGAGTTGCTACACACACTTTACGGCCTTTAATCAAGGGACATGGATTTTTTTCTTCAAACTGGGACAAATTCTATTGTAGATCAGGTTTGTCGGCTGCAAATAAGAACAAAGCACTATTTAATTTTGCAATGTTAACAAAATTACACAACATTGTAACATGATTCTCATTCATATCATTTCACGTCTTAAGTCTGATTATTTCAGTGTTTTTATTTTTTATTTTTTTAATTTAAGCTATTTTTCCTGGCTCTGGAGAGAGATCAGACACCATTTATCTTCCAATTTTGTATCTAAATCTAACAATATTCTTTAGTACACAA

Function

symbol description
rras Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within Notch signaling pathway and maintenance of epithelial cell apical/basal polarity. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in hindbrain and somite. Orthologous to human RRAS (RAS related).

GO:

id name namespace
GO:0045199 maintenance of epithelial cell apical/basal polarity biological_process

KEGG:

id description
K07830 RRAS2, TC21; Ras-related protein R-Ras2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_03839830_03843013.mRNA True 1189 mRNA 0.41 7 3839830 3843569

Neighbor

gene id symbol gene type direction distance location
CI01000069_03835903_03837843 NA coding upstream 1511 3835903 ~ 3838319 (+)
CI01000069_03812664_03832205 AP2A1 coding upstream 7551 3812664 ~ 3832279 (+)
CI01000069_03766564_03767936 NA coding upstream 71632 3766564 ~ 3768198 (+)
CI01000069_03643296_03647762 SYT13, SYT5B, SYT5A coding upstream 192044 3643155 ~ 3647786 (+)
CI01000069_03636156_03639756 NA coding upstream 199845 3635980 ~ 3639985 (+)
CI01000069_03845642_03851052 PRRG2 coding downstream 2073 3845642 ~ 3851213 (+)
CI01000069_03854857_03870627 PRR12, PRR12B coding downstream 11288 3854857 ~ 3870933 (+)
CI01000069_03886826_03898833 SCAF1 coding downstream 43257 3886826 ~ 3899025 (+)
CI01000069_03902139_03920099 TRPM4A coding downstream 58570 3902139 ~ 3920299 (+)
CI01000069_03927870_03929948 NA coding downstream 84301 3927870 ~ 3930379 (+)
G274733 NA non-coding upstream 32771 3804616 ~ 3807059 (+)
G274731 NA non-coding upstream 41955 3797568 ~ 3797875 (+)
G274628 NA non-coding upstream 42858 3791506 ~ 3796972 (+)
G274721 NA non-coding upstream 66286 3773094 ~ 3773544 (+)
G274716 NA non-coding upstream 78192 3760901 ~ 3761638 (+)
G274737 NA non-coding downstream 30207 3873776 ~ 3873980 (+)
G274743 NA non-coding downstream 39968 3883537 ~ 3883757 (+)
G274746 NA non-coding downstream 78719 3922288 ~ 3922571 (+)
G274748 NA non-coding downstream 88499 3932068 ~ 3932404 (+)
G274760 NA non-coding downstream 155414 3998983 ~ 4002223 (+)
G274603 NA other upstream 36329 3800023 ~ 3803501 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 944942 2893418 ~ 2894947 (+)
G274270 NA other upstream 1158672 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 1667637 2031954 ~ 2040427 (+)
G274619 NA other downstream 285559 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 711740 4555269 ~ 4558480 (+)
G274953 NA other downstream 1080898 4924467 ~ 4926687 (+)
CI01000069_05046565_05048523 NA other downstream 1202658 5045967 ~ 5049408 (+)

Expression


Co-expression Network