CI01000069_03886826_03898833 (SCAF1)


Basic Information

Item Value
gene id CI01000069_03886826_03898833
gene name SCAF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3886826 ~ 3899025 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_03886826_03898833.mRNA
GCATCATGAGGAACAGCGCCCCCTTCCTGCGGCAGACGGGAGTGGCTGCTCAGAGTGGAGAGAGGGGCACTGCCAGAAGCAGTGTTGCAAAGAGAGGCATTGTAGAGCAGTGCTGCCATTTCTACTGTGACTATTATGACCTGGAGAATTACTGGTTTCAGCGGGTTTTTAGCTTTGGGATTCACCAGCCGGCTCATCTCTGCACTATGAAGATGGGAACAGATGGACAGGCTGAAAAGGATGAAGAAGTTGTGTCAGGCAAGTCACAGACTGAACAAAGTAATGATGAAGAGGAGGAAGTGGATTCTAAAGCAGACAGAAGGACAGTTGGCTTAAGATGTTTCCAGGGAAATAGAGAGACCTCAGAGGATGAGCCTAGTGAACTGGGGGCTTCTGTTGTTACTTCCTCTGAGCCTGTATTTCTTGTGCCTCAGCTCAGCTCACAACCTCAGTACCTAGACTGTGACTTTGATGTGGAGCTAACAGCAGAGGTGAAAGTAGAGGACGGCGCATCTCTTGCTTTGTTGACATCTGTTACCCCAAACCTTGGTTACCAGAAACCAGGATCTTTTTTGAAAGGACATTTTCTCTTTCCAGCATCTTTAAGGAAAAAGAGAGTGTCTATAGACAGTTCTTTGCCTTCAGGCTCTTTTCCTGGATGCTGCTCAAGTGTAATTCAAGCCTCTGGACAGATGCAACTGCCCTGTTCCCTTAAAATCTCTGAGAGGGTCATAGAAATGGCCAAAAGCCCTCTCCCCTCATCACCCTCCAACTCACCATCATCTCCTTCATCTGCTCCCTCTTCCCCCTCTTCCTCCCCTTCATCGTCATCCCCTGGTGGAATGGGTACAAACTACCGTGAGGATGAAGACAGAGGCCATGCAGGAGACAGCAGAGGCAGCAAAGGAACTGGAGACTTTGTGTCATCCACGTCGTCCACTTTGGTACCATCATCAATGCCTGTGCCACCTTCTTCTTCTAATCCTTCACTGCATGCATCATCATCATCCACACATTCATGCAATGATGGACAGAGGGAAAGTTTAGAAAATGACATATACGACCCCTTTCACCCAACAGAGGGCGAGGGGGAGAGAGAGCGGGCGTCCACTGAAGATGAGGAGGAAGAGGTTGATAAGTATGATCCTTTTGAACCGACAGGTTCTCCAGCCTCTGAAACAGAGGAGGAGAAAAGATGTGTGGATGAGGGAGGAAGCAGCATTAATAGCGAAGGGAATGTTGCAAAAGCTGAAAGAGGATTGGAAATTGGGCCGCCTGCTGGCACAGAGGGGGGGCCTCCAGATTCAACAGAAATTGACGCTCCATCTTCGATGTTCAATAATGTACCTTTAGAACCCAACAGCAAGCGATCCATCAAAGACAGAATGAGGGAACAGGGAAAAAATCAAAGAGAACGGGGTACAGACTCTGAGCACTCTGAGATAGAAGAAGGAGAGATAGTGGGGGCCAATGAAAGAGGAAGAGAACGAGTGATTGAGAGAAGGAGGGAGGTGTTGCTTCCATCCTCAAGCAGTCCCTCTTACCTTCAAGGGGGTGTCCCGAAACCAGAGAGGATCTTACGGGTCTTAGAGGGTGATGGGTTTGTATCTGTCCGTGCTGATGAAGAATGGGAGAGGGAACCAGTAGCTTCCGATCTCAATGGCTCTGACCTTTTTGCGATCAAACGTACCATCACTGTTACCACCACTACAACGACCACCACAGTCCCAACCTCACCGCCTTGTAGCCAACGGCGCTCCCACAGCCGATCCCAGAGCTCTGACAAACATCATAAGAGGAAGAAAAAACGAAGGAGACGGTCAGATGATGATGAGCGAAAGGACGAGGAGCACAGGAGTAGGTCCCGCCCCACCTCCATAACGTCTCCTCGTTATCATGGATATGAATCAGATCATCTCTCTGACCGTCCTGAGGTAGACATGCTCTCTTTGGATGGGGAAGCACTGGATTCAGACTACCCTTCACTAGAGGACTCACCACTACTTCCTCCTCCTCCTGAGCCCCCTCTACCCAGTCCCAAAATTAAATCTGGAGCACCCAAAACTAGCCGACATCATCTGAAGAAGAAATCCAGACTTGGCAAGACAGTTGGTCAGTCTGAATCCACCTCCTCCTCTTCTTCTCATAGACCAAAAGCAAAAAGTAAAAACCTTTTGTCATCTCTCTCACCACCTCTTTCTGCATCCTCAGGCAACACCACCTCCCTTCAGCCCACAGCATTCTCATCCACCACTAAACGAGGAAGGAAAACCGGCAAGGAAAAAGTAGGGAAAAAGGATGCCGGGCGTTCTGGCAGGTCCAAAAAGCTCAGTGGCAGTAGCAGAAAGGGTAAGCTCCAGTCTAAAGTGTCTGTCTTGGTTCGTGAGGGTGTTAGCAGCACTACTGGGAACTCTGGAAAGTTGGGCCTTGACCTTCTTGGACCTGCTGGTGTTGTAAGTGGAGCTTCAGGGCCCTCAGTTGTTGGTGGGTCTATTGCTGTGGTGTTCCGCCGGGACAATGAGAGTCGGTCACCGTTTCTTAAGCCCTGCTCAGAGACACTGGCTCTTCCAGGTAGAGGCAAAGACCCAAGCAAAACTGGGAAGCAACGCAACATTCTCGGGCCTCCGTCATCAACAAATCCGAGTGGACTGAAGTTGAAGAAAGCCAAGCCTAGCTCTGCTACATCCACGTCCTCATCTGCCTCTTCCCCTACTTCCTCACTGGCAGCAAAACGTAGAAGGAGGCCTGGAAAGAAGCCCAGAGAAAAAGGGCTAACTGTGGATGGAAGTGATTCTAAAGGCGCTAATAGTAATTGTAGCACAGTTGGTGGTGGTTGGGAAGGGGTATCAACAGAAATGCAGCCGTTGCTTGGGGTTGGATCCAAGCCATCCAGTCCTCCTTCAGCTCTTCCTGGTCCCACTCCCTCATCCTCTTCATCATCCTCCTCTTCATCATCAGCAAGTATTCTTCCTCCATCCTCGTCACCACCCCACACACCCCCATTATCTTTGCCTCCGTCTCGAGATACTAGAGAGTCATCCCCAGACTCTCAAACTGTTGATAGTAGCTGCAAGACACCAGAGCCTTCATTCCATTTGGAGGAGGGCCCTGGTCAGTCCAAAGCCTCATCTCTCACACCTTCAAAGTCCCCTGCCAGCCCTCCCAGTCTGCTATCATCACAGATCAGGGGCGATACCATATCCCAGTCCACTTCCAGTGCTAAACCTCTCCTACCAGATGATCAGAAGGCATCACCACCATGCTCCACTTCAGCAGCTTTGGTGTCGGCCTCGATCTCTCATTCCAATGTTCCTCTGGCAAATGACCCTTCTTCCTCCTCCTCTTCTTCAGTGTCCTCATCTTCAGTAAACAAGCCACCGCCACCTCCGCCCCCACCCCCCTCAGCTCCGCCTTTACCCTGGAGTCTACAAACTGGAGTGGACTGCACTGCTGGAGGTGTTTTAGCATTGACAGCTCTCCTCTTCAAAATGGAGGAGGCCAATATAGCCAGCAGAGCCAAAGCACAGGAGTTTATCCAGGCCACAAGTCAGATTCTCTCTCAGGCCAATCAGAACCAGTCACAGACACACCCTCCTTCATCATCCTCATCTATATCATCACAAGTTCCTCCTCCTCCATCACATGCACCACCCCCAGGACCCACTCCTGCACAGTTTATTCTCCATAGCTCTGTTCCATTGGTTGGCTGCACCAAAACTCCTCCTTCACACTTACACCCTGGACTCTCAATGGGAGGAGGCTGTGCTCAGACTCCGCCACCTCCATTGCCAGCGGGAATGACAGGGCCAACAGGGGGCAGTGAAACGGGCTGGGACAATGAAAGTAAAGACCCTGACAAGTATCTGAAGAAGCTGCACACCCAGGAGAGGGCAGTAGAGGAAGTCAAATTGGCCATCAAGCCATACTACCAGCGCAAAGACATCAACAAAGACGAATACAAGGATATCTTAAGGAAAGCTGTGCACAAGATTTGTCACAGCCGAACAGGTGAGATCAACCCAGTTAAAGTGAATAACCTGGTCAAGCTTTATGTCCAGAGGTACAAGTATTTTAGAAAGCACGGCCGTAAGATGGATGAGGAGGAAAAAGAGGACAGGGAGTCTGCCTCAATGCATTCCTCAACATGATTGGACAAAGACTGTTTATTTCTCTCCATCTGGTCAAACAAGTTTGCAAAATCTCCTCCCCTGCACGTGTTTGGGCCCACCATGGCTATTGAGTGACAGTCGTTTGTTATATTGTTCTGTTCCCCCTCTGTGTCGACATCATGTAGACTTCAGTACTCCAACCTCCTTCCCATCTCTCTTTCTTGTCTTGCT

Function

symbol description
scaf1 Predicted to enable RNA polymerase II C-terminal domain binding activity. Orthologous to human SCAF1 (SR-related CTD associated factor 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_03886826_03898833.mRNA True 4340 mRNA 0.50 12 3886826 3899025

Neighbor

gene id symbol gene type direction distance location
CI01000069_03854857_03870627 PRR12, PRR12B coding upstream 15893 3854857 ~ 3870933 (+)
CI01000069_03845642_03851052 PRRG2 coding upstream 35613 3845642 ~ 3851213 (+)
CI01000069_03839830_03843013 RRAS coding upstream 43257 3839830 ~ 3843569 (+)
CI01000069_03835903_03837843 NA coding upstream 48507 3835903 ~ 3838319 (+)
CI01000069_03812664_03832205 AP2A1 coding upstream 54547 3812664 ~ 3832279 (+)
CI01000069_03902139_03920099 TRPM4A coding downstream 3114 3902139 ~ 3920299 (+)
CI01000069_03927870_03929948 NA coding downstream 28845 3927870 ~ 3930379 (+)
CI01000069_03935114_03939004 NOSIP coding downstream 35283 3934308 ~ 3939158 (+)
CI01000069_03953485_03961584 PAX10 coding downstream 54319 3953344 ~ 3961836 (+)
CI01000069_03965213_03971865 NA coding downstream 66087 3965112 ~ 3972048 (+)
G274743 NA non-coding upstream 3069 3883537 ~ 3883757 (+)
G274737 NA non-coding upstream 12846 3873776 ~ 3873980 (+)
G274733 NA non-coding upstream 79767 3804616 ~ 3807059 (+)
G274731 NA non-coding upstream 88951 3797568 ~ 3797875 (+)
G274628 NA non-coding upstream 89854 3791506 ~ 3796972 (+)
G274746 NA non-coding downstream 23263 3922288 ~ 3922571 (+)
G274748 NA non-coding downstream 33043 3932068 ~ 3932404 (+)
G274760 NA non-coding downstream 99958 3998983 ~ 4002223 (+)
G274671 NA non-coding downstream 240105 4139130 ~ 4140762 (+)
G274659 NA non-coding downstream 241855 4140880 ~ 4141167 (+)
G274603 NA other upstream 83325 3800023 ~ 3803501 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 991938 2893418 ~ 2894947 (+)
G274270 NA other upstream 1205668 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 1714633 2031954 ~ 2040427 (+)
G274619 NA other downstream 230103 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 656284 4555269 ~ 4558480 (+)
G274953 NA other downstream 1025442 4924467 ~ 4926687 (+)
CI01000069_05046565_05048523 NA other downstream 1147202 5045967 ~ 5049408 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025482 scaf1 coding NC_007114.7 CM002887.2 32477782 ~ 32490621 (+)