XLOC_010489 (si:ch73-296e2.3)


Basic Information

Item Value
gene id XLOC_010489
gene name si:ch73-296e2.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11960417 ~ 11963804 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020586
aatTTACAATTATTCTCTCCATCAGCACTGTGCGTTTCACCTGGGGTGTGTGAGGTGTTGCTGTATCAAGGAGTTGGGAAAGAGGTTTCTTTGCAGTGTGGAGCATCTTCAAATAGTGATATAGAGTGGAGGTTAAACGGCAATCTCTTAATCAGCATTAGAGGCAAAACTGGATTAAGACGCAAGGGTTCTGGCCATACTGCGGACAAAGTAAATTTATATGGAGACACTCTGAAGGTTCCCAGACTGGAGCCAAGAGACTCTGGAGTTTATTCCTGCACACAGTCAGGGAAACAATACACGCTGCATGTTGTGTCTGTGTTTGTTAAACCAGGCCCAGTGCTGATTCAGTCTAGTGATGTGGAGCTGCACTGCAACATTGAAGGAGACCCAAACACTGAAGTAGAGTGGCTGAGACCCCCTAATGATCAAGTACATGACGCAAAACATCAAGTGATTCATTTGAAGTCTGTGACTTTGAATGATGGTGGCAAGTGGACATGTGTGGTCAATGACTTTAAGTTCAGTGTTACGCTGACGGTTGTTGGTGGGGGTCCCCTAGTTTTAAACCAAATTCATTCTGTAtaaaatagttttcataactataatatttcagattttataCTGACAAGACAACTCTGACAAATTTAAGGATTTATGTATTGCAGATTGTTTTCGGAAATGTTTAATAGCATGCAAATATctttgcaaacaaacaaatgtataatgaaaatttcagtaaaaaaaaaaaattaatgc
>TCONS_00020587
ATGCGCAGATCTATGAATATGAAACTTGTCAACAGGATACAAAACCTCCATCCAAACgacatgTCAACTTGCAAGATGCTGTTTTTACTCATTTTAGCACTGAGTGTTTCATCTGGGGTGTGTGATGTGCCTCATAAAGAAGCCGGGAAAGAGGTTTATTTGCAGTGTGGAGCACCTCCTAATAGTGATATAGAGTGGAGGTTAAACGGCAATCTCTTAATCAGCATTAGAGGCAAAACTGGATTAAGACGCAAGGGTTCTGGCCATACTGCGGACAAAGTAAATTTATATGGAGACACTCTGAATGTTCCCAGACTGGAGCCAAGAGACTCTGGAGTTTATTCCTGCACACAGTCAGGGAAACAATACACGCTGCATGTTGTGTCAGTGTTTGTTAAACCAGGCCCAGTGCTGATTCAGTCTAGTGATGTGGAGCTGCACTGCAACATTGAAGGAGACCCAAACACTGAAGTAGAGTGGCTGAGACCCCCTAATGATCAAGTACATGATGCAAAACATCAAAAGATTAACCTGAAATCTGTGTCTTCAAGTGATGAAGGCAAGTGGACTTGTAAGGTCGAAGACCTGAAGCTCAGTGTTACACTGACTGTTGTTGCAAACCACCAGATCAATAATGTTGAAGTTTCTGAAGGGGACGACATAGAGCTGCCATGTTTTCTTCCTCGTCCTGTATCTCAGAGTGTTTTGGGGGGGGAATGGAAAGCAGACCACCTTCCCACAGTCCCATTCCCAACCCTGAAGAACACAGCAGACGAAGGCTTACACTGGGATGGCGTAAATTCATCAGTagtcaaatataatattgaacgCCTCAGCACCAACTTCAATGTCACTCTGATAAATGTGCAGAGCAGCTTTGCAGGGAAGTTTGTGTGTGAAGTGGAGTTTGAGCATGGAGGAAAATTAACTGCTGTGACCAATTTGATGGTTTTGGCCGAAACAACAGATAAAACAGATCTACACGCACTGTGCGTTTCACCTGGGGTGTGTGAGGTGTTGCTGTATCAAGGAGTTGGGAAAGAGGTTTCTTTGCAGTGTGGAGCATCTTCAAATAGTGATATAGAGTGGAGGTTAAACGGCAATCTCTTAATCAGCATTAGAGGCAAAACTGGATTAAGACGCAAGGGTTCTGGCCATACTGCGGACAAAGTAAATTTATATGGAGACACTCTGAAGGTTCCCAGACTGGAGCCAAGAGACTCTGGAGTTTATTCCTGCACACAGTCAGGGAAACAATACACGCTGCATGTTGTGTCTGTGTTTGTTAAACCAGGCCCAGTGCTGATTCAGTCTAGTGATGTGGAGCTGCACTGCAACATTGAAGGAGACCCAAACACTGAAGTAGAGTGGCTGAGACCCCCTAATGATCAAGTACATGACGCAAAACATCAAGTGATTCATTTGAAGTCTGTGACTTTGAATGATGGTGGCAAGTGGACATGTGTGGTCAATGACTTTAAGTTCAGTGTTACGCTGACGGTTGTTGGTGGGGGTCCCCTAGTTTTAAACCAAATTCATTCTGTAtaa
>TCONS_00022127
AtgattttctatctatctatctCACTGTGCGTTTCACCTGGGGTGTGTGAGGTGTTGCTGTATCAAGGAGTTGGGAAAGAGGTTTCTTTGCAGTGTGGAGCATCTTCAAATAGTGATATAGAGTGGAGGTTAAACGGCAATCTCTTAATCAGCATTAGAGGCAAAACTGGATTAAGACGCAAGGGTTCTGGCCATACTGCGGACAAAGTAAATTTATATGGAGACACTCTGAAGGTTCCCAGACTGGAGCCAAGAGACTCTGGAGTTTATTCCTGCACACAGTCAGGGAAACAATACACGCTGCATGTTGTGTCTGTGTTTGTTAAACCAGGCCCAGTGCTGATTCAGTCTAGTGATGTGGAGCTGCACTGCAACATTGAAGGAGACCCAAACACTGAAGTAGAGTGGCTGAGACCCCCTAATGATCAAGTACATGACGCAAAACATCAAGTGATTCATTTGAAGTCTGTGACTTTGAATGATGGTGGCAAGTGGACATGTGTGGTCAATGACTTTAAGTTCAGTGTTACGCTGACGGTTGTT
>TCONS_00020588
ACCTTTTTACATCCTCCATCAGCACTGAGTGTTTCATCTGGGGTGTGTGATGTGCCTCATAAAGAAGCCGGGAAAGAGGTTTATTTGCAGTGTGGAGCACCTCCTAATAGTGATATAGAGTGGAGGTTAAACGGCAATCTCTTAATCAGCATTAGAGGCAAAACTGGATTAAGACGCAAGGGTTCTGGCCATACTGCGGACAAAGTAAATTTATATGGAGACACTCTGAATGTTCCCAGACTGGAGCCAAGAGACTCTGGAGTTTATTCCTGCACACAGTCAGGGAAACAATACACGCTGCATGTTGTGTCAGTGTTTGTTAAACCAGGCCCAGTGCTGATTCAGTCTAGTGATGTGGAGCTGCACTGCAACATTGAAGGAGACCCAAACACTGAAGTAGAGTGGCTGAGACCCCCTAATGATCAAGTACATGATGCAAAACATCAAAAGATTAACCTGAAATCTGTGTCTTCAAGTGATGAAGGCAAGTGGACTTGTAAGGTCGAAGACCTGAAGCTCAGTGTTACACTGACTGTTGTTGCAAACCACCAGATCAATAATGTTGAAGTTTCTGAAGGGGACGACATAGAGCTGCCATGTTTTCTTCCTCGTCCTGTATCTCAGAGTGTTTTGGGGGGGGAATGGAAAGCAGACCACCTTCCCACAGTCCCATTCCCAACCCTGAAGAACACAGCAGACGAAGGCTTACACTGGGATGGCGTAAATTCATCAGTagtcaaatataatattgaacgCCTCAGCACCAACTTCAATGTCACTCTGATAAATGTGCAGAGCAGCTTTGCAGGGAAGTTTGTGTGTGAAGTGGAGTTTGAGCATGGAGGAAAATTAACTGCTGTGACCAATTTGATGGTT
>TCONS_00022128
ATGCTGTTTTTACTCATTTTAGCACTGAGTGTTTCATCTGGGGTGTGTGATGTGCCTCATAAAGAAGCCGGGAAAGAGGTTTATTTGCAGTGTGGAGCACCTCCTAATAGTGATATAGAGTGGAGGTTAAACGGCAATCTCTTAATCAGCATTAGAGGCAAAACTGGATTAAGACGCAAGGGTTCTGGCCATACTGCGGACAAAGTAAATTTATATGGAGACACTCTGAATGTTCCCAGACTGGAGCCAAGAGACTCTGGAGTTTATTCCTGCACACAGTCAGGGAAACAATACACGCTGCATGTTGTGTCAGTGTTTGTTAAACCAGGCCCAGTGCTGATTCAGTCTAGTGATGTGGAGCTGCACTGCAACATTGAAGGAGACCCAAACACTGAAGTAGAGTGGCTGAGACCCCCTAATGATCAAGTACATGATGCAAAACATCAAAAGATTAACCTGAAATCTGTGTCTTCAAGTGATGAAGGCAAGTGGACTTGTAAGGTCGAAGACCTGAAGCTCAGTGTTACACTGACTGTTGTTGCAAACCACCAGATCAATAATGTTGAAGTTTCTGAAGGGGACGACATAGAGCTGCCATGTTTTCTTCCTCGTCCTGTATCTCAGAGTGTTTTGGGGGGGGAATGGAAAGCAGACCACCTTCCCACAGTCCCATTCCCAACCCTGAAGAACACAGCAGACGAAGGCTTACACTGGGATGGCGTAAATTCATCAGTagtcaaatataatattgaacgCCTCAGCACCAACTTCAATGTCACTCTGATAAATGTGCAGAGCAGCTTTGCAGGGAAGTTTGTGTGTGAAGTGGAGTTTGAGCATGGAGGAAAATTAACTGCTGTGACCAATTTGATGGTT

Function

symbol description
si:ch73-296e2.3 Predicted to enable MHC class II protein binding activity and protein tyrosine kinase binding activity. Predicted to be involved in T cell activation; interleukin-15-mediated signaling pathway; and positive regulation of ERK1 and ERK2 cascade. Predicted to be active in external side of plasma membrane and membrane raft.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-127 Predicted to enable MHC class II protein binding activity and protein tyrosine kinase binding activity. Predicted to be involved in T cell activation; interleukin-15-mediated signaling pathway; and positive regulation of ERK1 and ERK2 cascade. Predicted to be active in external side of plasma membrane and membrane raft. Is expressed in blood; gill; liver; muscle; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDARG00000073950 ENSDARG00000079769

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020586 False 759 mRNA 0.40 3 11960417 11961325
TCONS_00020587 False 1548 mRNA 0.44 10 11960588 11963804
TCONS_00022127 False 543 lncRNA 0.44 4 11960630 11961493
TCONS_00020588 False 876 mRNA 0.45 5 11961685 11962959
TCONS_00022128 True 876 lncRNA 0.45 6 11961685 11963079

Neighbor

gene id symbol gene type direction distance location
XLOC_010488 cd4-1 coding downstream 14278 11911897 ~ 11946139 (-)
XLOC_010487 cxcr3.1 coding downstream 101108 11853212 ~ 11859309 (-)
XLOC_010486 cnfn coding downstream 161423 11790640 ~ 11798994 (-)
XLOC_010485 tlr21 coding downstream 171309 11785967 ~ 11789108 (-)
XLOC_010484 zgc:158701 coding downstream 180756 11760602 ~ 11779661 (-)
XLOC_010490 usp5 coding upstream 1567 11965371 ~ 11986321 (-)
XLOC_010491 NA coding upstream 28762 11992566 ~ 12005084 (-)
XLOC_010492 CU467865.1 coding upstream 48270 12012074 ~ 12012188 (-)
XLOC_010493 si:ch211-69g19.2 coding upstream 88206 12052010 ~ 12060782 (-)
XLOC_010494 pex5 coding upstream 100772 12064576 ~ 12097558 (-)
XLOC_010626 CR392024.2 misc upstream 8931308 20895112 ~ 20895175 (-)
XLOC_010483 NA non-coding downstream 320945 11597384 ~ 11639472 (-)
XLOC_010482 BX005242.1 non-coding downstream 421596 11437869 ~ 11538821 (-)
XLOC_010480 NA non-coding downstream 948765 10980052 ~ 11011652 (-)
XLOC_010479 NA non-coding downstream 1040983 10917584 ~ 10919434 (-)
XLOC_010478 CU468227.1 non-coding downstream 1044013 10916290 ~ 10916404 (-)
XLOC_010497 CR388102.3 non-coding upstream 275603 12239407 ~ 12239460 (-)
XLOC_010498 CR388102.2 non-coding upstream 284058 12247862 ~ 12247920 (-)
XLOC_010499 CR388102.4 non-coding upstream 286464 12250268 ~ 12250323 (-)

Expression


Co-expression Network