CI01000069_04113962_04124908 (TBC1D10B)


Basic Information

Item Value
gene id CI01000069_04113962_04124908
gene name TBC1D10B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4113081 ~ 4125207 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_04113962_04124908.mRNA
TTATATATAGATCATACGGAAGTCCATGAGGCAGATCTTAATGTAAGAGGAAATAGTGGTAAGCTGTTCCTTTACACTGTACCTAAAGTAGATCTGTAAAGACTAGTGCCACCTATCATATCAATGTCTGCATCTGTATAATTCATATTCATTGAGACTTTCTTTGAAACAGTACACAGTTGTCTTTACCAAACAATTGAAAGGTCCTCTGGTCTGAATATCTCTTACTCTTTAGGATATTCTTAAAAATTGCATGTTGTTACCCTTTATTTATTATTAGTTACTAATTTACATATAGACAGTTACTAATTTACATATAGGTATAACTTTCACAAACTGCTGTATATCTCCTCTTCATCTTCAGCATATATGTTTTGAAGTAACTTTACTTGAGATATTTTGTTAAATCTTATTCAGTGGAGAGAGAGAGTGGAGAATCTAAGAAAACGTTACTCTTAATTTGGTTATCAAAGTATAATGTTTAAAGGTACACTGTCAATCTAAAGTTTGGAGTCAGAATGTTTTTTTGTTGTTTTTGTGAAGAAGGTAATACTTAATAATTAGTCTAAACCAGTTTATACTAATTTAATACTTATTCAGCAAGAATGCATTAAATTGATCCAAAGTGGCAGAAAAGACATTTAAAGATTTATTTCTCAGGATAAATTACATAAAAATATTAAAATAAACAACAGTTCTTTTAAATTGTAACATTATTTCACAAAATAAGTGTTTTTACTGTATCAAAGAAATGCAGCCTTGGTGAGCATAAGAGACTTCTAACCCCGTTTTGAAAAATCTTACCGACCCCAAACTTTGAACACTAGTGTGTATTCTGGGTTAAATGCACATTGTAGTTCTCTAAGATCTACACGTTAAGCATGCTGTCAGTTACTACAGAAAATAAAAACACAGTCACAGATTGTACAAGCAAACAAGAAATGTGTCTACAGTTGCCCCGTAGACTTCTATTCTGGATCTTTGAGGAGACTATGGCTGAAATCTCCACCTTCACCCCCTCCTCTCCCAGTATGGCTGACCAATCAGTGCCTGCTCCCTCCAGCCCACAGCCTCTCCCTTCAGAAACTCCCATCCCAAAATCATCTCTCTACGGGGACCGAGCCGTAATGGGAAACCCAACATTACAGGCAGGTGTAATAAACTCTTCATCTTGGGAGACCACACCTGGCCAAAACAATTCAGCTGCCTCTTCAACAGCAACAAAGAGCGCCGTTGGTCCGCCAGTAGAGGTACTAGCTGCTACAGATGGGGCGTCTAATGGGAAAAACGATTTAATTGGCCAAACGGAGCAGCACATTGAAGCACAAGGCTCAGAGCAGGAACAGCAGATGCCACCGTCGCCTGAACTTAATCCCAGTCCTAATCTGTATCCCATCGTTCAAGTCAGCCGGAATTCCAGTCCTGCTCCCCCCATAGACCTTCCTCCTCAGTTTACCCCTCCTCCTATTCCCGTCTCCAACCCGGCCCCCTCTTCACAAGACTCCAGGCAAACAGAAGCACAAACAGTCCCACAGCAGGAGCCCACCCAAAATCCCGAACCCAACACTCCCAGCACCGGCAGGATGACCCCTGAGCCCCCCTCCACACCCTCCAAGGCTGAACCCCCAGCTGTACTGGTGGAGGAGTCTGGGCCCTTGTTTCTGCCCTCCACTTACACACGTCCGGCTCCGGACACGCTCAGCTACCTGGAGTCGGCCAGCCTGATGTCAGGCACTCTGGAGTCTCTGTCAGGGCTCGGCGAAGACGGCAGCTCGCTGGGGTCAGACTCGGAGATCAACGGCCCAGTGAGGCGTACTGATAAGTATGGCTTCCTGGGTGGAGCGCAGTACAGTGAAGGAAGTGAGGCGGAAATCGCTGTGGCCGTGGCGAGACAGAGAGAAATGAAATGGCTGGACATGTTCAGAAACTGGGACAAATGGGTATCACGACGCTTTCAAAAGGTAAAAATGCGCTGCAGGAAAGGAATCCCTTCCTCACTCAGAGCTAAAGCCTGGCAGCTGCTCTCCAACAGCCAGGAGCTCCTCGAGTCCAATCCTGGAAAGTTTGAGGAGTTGGAGCAAGAGCCAGGAGATCCAAAGTGGTTGGACATCATAGAGAAGGACTTGCACAGGCAGTTCCCGTTTCATGAGATGTTTGCTGCTCGGGGAGGACATGGGCAGCAGGACCTGTACCGTATACTGAAGGCCTACACAATCTACCGGCCGGATGAGGGCTACTGTCAGGCCCAGGCCCCAGTGGCAGCAGTGCTGCTCATGCACATGCCTGCTGAGCAAGCCTTCTGGTGTCTTGTGCAAATCTGTGAGAAATTTTTGCCTGGCTACTACAGTGCTGGGCTGGAGGCTATTCAGCTGGACGGAGAGATTTTTTTCTCTCTTCTGAGGAGAGTGTGTCCCATGGCTTACCGTCACCTGAAGAAATTTAAGATTGACCCCATCCTGTACATGACAGAGTGGTTTATGTGCATTTTCTCCCGTACGCTGCCTTGGTCTTGTGTCCTGCGTGTCTGGGACATGTTCTTCTGTGAAGGAGTGAAGATTGTGTTCCGGGTAGGGTTGGTGCTACTTAAGCAGATGCTGGGGTCTGTGGATAAGCTCCGTGAGGTGCAGGGCATGTACGAGACCATGGAGCGACTAAGGAACATCCCCCCTGAAAGCATCAAGGAGGAAGTTCTGGTGCAAGAGGTGGTCTCTCTGTCTGTGACAGAGGCCCTGATCGAGAGGGAGTGCAGTATTCAGGTGCGTAAGTGGAGGGAATCTCGTGGCGAGTTGACTCACCAACCGATTCGCCGTTTGCACGGCACACGTGCCATCTACGAGCAGAAACACCGGGCTGCTGCGATCAGCTCTGGCGGCAGCCTGTCATTCCTGGGTGGTCATGTCCCTCCCCCCGGACCCTTGCGTGCGTCATCAAGCCTCCTGTCACTTCCTGGTCTTAGAAAGTCCAAGATGCCATTTCATACACAGAATAAGAAGAGCTCCACCTCTAGCAGCTTGGGCCAGGATATCGTCCCACTGCAGCCACTTGGGGGTGGTGCCAGTGCAGTAGCCTCAAAACCTCCAGTGCCACCTGCTTCTAATGCTGGAGCCGGTGGGCGTCCACCGGCACCACATGGGCCCAGTCCGCTAGCTACAACATCTACTACAACGCCGCCGGCTCCAACCGCACACGCTTCCAGTGCAAACATGCTCCAACCATCGCCTAAAGTTGTCTCTGAACACATCACCCCCACCATCCCATCACCCACTGCAAACAACGCACCATTACCTCCTTGCCCAGAAACTGCAAAAACAGCAAAGAGGACAAGGTATCAACTGGTGCAGACTGGTGAAAAGAGACAGAGAGGGAAAGCGAACTATCTCCTGTAACGTCTATTTCATCTCAAGTACTCATTTCACAAGAGTAATTGGATCACTGCATCTGCCCCACGTCTCTCATCTCATCTGCACAGTACTTTCACCCGATGCTGCAACAGGAAGCGGTTATTACTCTACTTTTTATTTTTGTTTGAAGGAGGATACCTGATTGATGAGATCAGCTGTATAATTAGTAGTCAATTCTAGTGTACTGGGTGCCATGGTGTACATACAGTAGACCTCTAGCGCCATCTGTGCCAGTCCAACCCCTCTGTCCGTCACCCGAGAGGTGTCTCAACCAGAATACCTGA

Function

symbol description
tbc1d10b Orthologous to human TBC1D10B (TBC1 domain family member 10B).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_04113962_04124908.mRNA True 3685 mRNA 0.48 11 4113081 4125207

Neighbor

gene id symbol gene type direction distance location
CI01000069_04089580_04103908 HSD3B7 coding upstream 8422 4089580 ~ 4104659 (+)
CI01000069_04055396_04078361 SETD1A coding upstream 34341 4055396 ~ 4078740 (+)
CI01000069_04047810_04052352 NA coding upstream 60435 4047576 ~ 4052646 (+)
CI01000069_04042802_04047285 NA coding upstream 65724 4042802 ~ 4047357 (+)
CI01000069_04037283_04041863 NA coding upstream 71218 4037283 ~ 4041863 (+)
CI01000069_04143761_04147538 CD2BP2 coding downstream 18554 4143761 ~ 4147679 (+)
CI01000069_04151875_04159107 NA coding downstream 26668 4151875 ~ 4159191 (+)
CI01000069_04165021_04170544 NA coding downstream 38921 4164128 ~ 4170555 (+)
CI01000069_04203202_04214241 NA coding downstream 77995 4203202 ~ 4214325 (+)
CI01000069_04230190_04235064 NA coding downstream 104162 4229369 ~ 4235081 (+)
G274760 NA non-coding upstream 110858 3998983 ~ 4002223 (+)
G274748 NA non-coding upstream 180677 3932068 ~ 3932404 (+)
G274746 NA non-coding upstream 190510 3922288 ~ 3922571 (+)
G274743 NA non-coding upstream 229324 3883537 ~ 3883757 (+)
G274737 NA non-coding upstream 239101 3873776 ~ 3873980 (+)
G274671 NA non-coding downstream 13923 4139130 ~ 4140762 (+)
G274659 NA non-coding downstream 15673 4140880 ~ 4141167 (+)
G274669 NA non-coding downstream 58995 4184202 ~ 4192064 (+)
G274653 NA non-coding downstream 96215 4221422 ~ 4370572 (+)
G274775 NA non-coding downstream 132237 4257444 ~ 4306259 (+)
G274603 NA other upstream 309580 3800023 ~ 3803501 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 1218193 2893418 ~ 2894947 (+)
G274270 NA other upstream 1431923 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 1940888 2031954 ~ 2040427 (+)
G274619 NA other downstream 3921 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 430102 4555269 ~ 4558480 (+)
G274953 NA other downstream 799260 4924467 ~ 4926687 (+)
CI01000069_05046565_05048523 NA other downstream 921020 5045967 ~ 5049408 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00012157 NA coding CM030138.1 CM030138.1 11807999 ~ 11813611 (-)