CI01000069_04917103_04918567 (ALKBH7)


Basic Information

Item Value
gene id CI01000069_04917103_04918567
gene name ALKBH7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4917103 ~ 4918901 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_04917103_04918567.mRNA
GCGTCATCATATGTCTTTAACAGTATGACGCTAATTAGAGTAGTGAAACAAGTACAGAGAAAATCTCTCCAATGCCCCCTATTGTGTAGGTTTTCATCGGATAGCTCAGCACTACGAAAAGGGCCCGAGTGCAAAGAGGAGTGTAAATGGTTGTGTGGATCGTCTCAGGAAATTCTGTCCGCAGTGCGTGGACAAGTTGAAGTTAGGCAGAACTTCATCAGCGAGGAAGAGGAGAATGCCCTTTTTAAAGAAGTAGAGCCAGGACTTAGAAAAAAGCGATATGAATTTGACCACTGGGACGATGCTATCCACGGCTACAGAGAAACAGAGCGGCTGCAGTGGGGAGTTATGTGTGAAAGCATCTTAAGGCGGGTGAGAGCAGTTGCATTTCCTGAAGGCAGTCCACTGCTCGGGCCGATTCATGTTCTGGACCTGGATAAAGAGGGCTATATCAAACCCCATATTGACAGTGTGAAGTTCTGTGGAAGCACTATTGCAGGGTTGAGCCTGTTATCCGATAGTATTATGCGTCTGGTCCCAGAAAATAATTCCACAGATTGGGTGGACTTGCTTCTGAGTCGGCGCTCACTTTATATATTGAGGGATGATGCTCGTTTTAAATTCACCCATGAAATCCTGAAAGATGAAGACTCCTTTTTCTCAGGGCAGAAGGTTCCACGCCATCGCCGCATCTCTGTGATCTGTCGAAACCTGCCTGTGTGAAGGAATTGAGACTACACTGACCATAGCACCGGTCTTGGAAACACTGTGGCTCACTGATCTAGAAGTTGACACATTGTTCACCTTTCAGATACTCTCGTATAGATGAAAAAATATCATCAATCAGATGCATTTTTCCTGGAATAACCACAAAGAAACTGTGGAAACAATGGGTAGCATTATAACATTCAGCTCACTGAAATGTGGTTTAAATACCTCTGGAAGATTTATGAAGGGGAGGGATTTGATTTATGCAATTTATAATGTAAAATGAGTGGGTAAAAGAAAAGAGGACAGTCATTGGAACTGCTTCTGCTTCTATTTACAATGTCTATGA

Function

symbol description
alkbh7 Predicted to be involved in fatty acid metabolic process. Predicted to act upstream of or within cellular response to DNA damage stimulus and regulation of mitochondrial membrane permeability involved in programmed necrotic cell death. Predicted to be active in mitochondrial matrix. Orthologous to human ALKBH7 (alkB homolog 7).

GO:

id name namespace
GO:0005759 mitochondrial matrix cellular_component

KEGG:

id description
K10769 ALKBH7; alkylated DNA repair protein alkB homolog 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_04917103_04918567.mRNA True 1057 mRNA 0.44 4 4917103 4918901

Neighbor

gene id symbol gene type direction distance location
CI01000069_04791495_04792375 NA coding upstream 124423 4791351 ~ 4792680 (+)
CI01000069_04776672_04785162 NA coding upstream 131671 4775370 ~ 4785432 (+)
CI01000069_04773976_04774606 NA coding upstream 142144 4773976 ~ 4774959 (+)
CI01000069_04612170_04623197 GTPBP1, GTPBP1L, GTPB1 coding upstream 293652 4612170 ~ 4623451 (+)
CI01000069_04562461_04568806 MPP2A coding upstream 348207 4562461 ~ 4568896 (+)
CI01000069_04981836_04982608 NA coding downstream 62058 4980959 ~ 4983096 (+)
CI01000069_04990240_04994522 ALDH3B1 coding downstream 69834 4988735 ~ 4994869 (+)
CI01000069_05002707_05021316 CARM1.L, CARM1P1.L, CARM1 coding downstream 83806 5002707 ~ 5023082 (+)
CI01000069_05033299_05034403 NA coding downstream 114398 5033299 ~ 5034605 (+)
CI01000069_05046565_05048523 NA coding downstream 127066 5045967 ~ 5049408 (+)
G274997 NA non-coding upstream 1018 4915853 ~ 4916085 (+)
G274993 NA non-coding upstream 9234 4907477 ~ 4907869 (+)
G274991 NA non-coding upstream 20092 4896210 ~ 4897011 (+)
G274979 NA non-coding upstream 55765 4861107 ~ 4861338 (+)
G274978 NA non-coding upstream 56663 4860231 ~ 4860440 (+)
G274950 NA non-coding downstream 23454 4942355 ~ 4973465 (+)
G274958 NA non-coding downstream 44736 4963637 ~ 4964941 (+)
G275008 NA non-coding downstream 50321 4969222 ~ 4986267 (+)
G275017 NA non-coding downstream 68864 4987765 ~ 4987990 (+)
CI01000069_04556116_04558002 PYY, PYYA other upstream 358623 4555269 ~ 4558480 (+)
G274619 NA other upstream 783725 4129128 ~ 4133378 (+)
G274603 NA other upstream 1113602 3800023 ~ 3803501 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 2022215 2893418 ~ 2894947 (+)
G274953 NA other downstream 5566 4924467 ~ 4926687 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025520 alkbh7 coding NC_007114.7 CM002887.2 33918510 ~ 33922150 (+)