CI01000069_05046565_05048523


Basic Information

Item Value
gene id CI01000069_05046565_05048523
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 5045967 ~ 5049408 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_05046565_05048523.mRNA
GTTTAAATGAGGAGAGAGAGAGAGTGATGAGAGAGAAACACAGGGGAAGGGGGTAAGTATAAAAATATAAATGTCTGTCTGGAGTGTGAAAATGTTTGAAGATGGGAGGAAATACAGACGGAACAGGCACCCAAAAGAGAGTGAGAAAAAAAGGGTGCGCAAGAGAGTAGGGTGGGGATGAAGGGGGAGGGAAGGAAATGAAGAGTGAGGGAGGGAGAGAGAGAGAGAAGCAGAGGGAGAGGGAGAGGGAGAGGGGGAGGAGAAGGAAGCAGAGCATTCACAATTTTCATTCAAACTGACACAGCCCGTGTATCCCGGTTTGCACTCCCCACTCCCTCTCTCTACACGCACACATACACACAGAGAAAGAGAGAGAGAGAGAGAGAAACACCAGACCGTCTGCAGTTAAGTTAACAGTGGCTAGAGGACAGCTTCAAGAAGAGTGAGAGACCGGGACGAGAAAACCCGAGGAGACCGGCGGAAGTGGTGAGAATAGAAAGAGGAGGTATGGAATTCACAAAGAGATGTCAGGGTGGAAGGTGAGTAGGGAGAGGACGAAGAGTTTTAAAATAGAAGAGAGAAAAAGGGAGGTGGAGGAATGCAGGGGTGGAACGGCCGAGCTCGACGTATGGAGGGGGGCAGAGATCGACTGGAGCCAGACTGGGTGTATGCATCTGAGAGAGTCACTGTGCAACCCCCTGTTCCCGCTCACTCTCAGCTCCTGGTCCCTTCCCCCCACGATCAGATAATAGACCCCACAGAGCTCATGCTATACTTCATGCAGAGCTCTGCGCCCACTTCCCTGTGCATTTGACCAGATCTCCACAGCCCCCAGTGCTCACACAAAACTTCCCGTCAGCGACTGTGAGTGCACAGTCCCATATGGCTCAAAAATGTATTTGTCCTGGCCAAAATATATGCTAAATACATGCTTAAGGACATGTATTTTTCAAATCAACAAAATTTACTGCAATATGTAATGCAATATTGCAATGTATTTTAGGGGGCAAGAAAACACATTCAGTCTTAAAATGCTGCACTTTGGGTAAATGCAAAATGTTTGTGCATATATATATATATAATATATATCTGCAACTTTTTTACTGTGGGGATGGGTTGTAGATTTGTTAATGTGGTTAACATAATTGAAACTAGTTGGGGTGGGAATGTAAGAAATATCATGTGAGGTACATAACTGTGTTCATGTCAATTTTTTAATGTGCATGTCTAAAATCACACAATTCCAGCAGAATCCAAAGTATGTGTCAGTCCCAGTCGAGTCTCAGTGAACATTCAACGCTGTCGGTGAGTTTGCAAGTCAAAGAAACCATCGAGTGTTGAGTGTACCCTGCCTCTTGAACACACTCCGACCACATAGACCTTCTGAGTGCCAGCAACTACATGTGTGAGTCCATTTTGTTGCTGAGCTGGCCAAGATGGCTGCTGTAGTGTCTCTAAAGCTGTCCCAGCTGATCAGTGAAGCGAGAGACTGTATTCTGCATCTACTGTCACAGCTCTGAGTCCTGATTCACATTCATTGCTGTCGGTGGGTTTTATCTCTGACTCGCCGGACAATGAATGAGAACTATGGCCCTTCCTGCACTAATGTATACCAAAGCTGTGGGTTGAGAAAATAAGGACTGTTAATCTTTTTCACTATTAGACATGTCACTCAACCCATGTACATCAAAGAAGGTCA
>TU312063
AGAAGGAAGCAGAGCATTCACAATTTTCATTCAAACTGACACAGCCCGTGTATCCCGGTTTGCACTCCCCACTCCCTCTCTCTACACGCACACATACACACAGAGAAAGAGAGAGAGAGAGAGAGAAACACCAGACCGTCTGCAGTTAAGTTAACAGTGGCTAGAGGACAGCTTCAAGAAGAGTGAGAGACCGGGACGAGAAAACCCGAGGAGACCGGCGGAAGTGGTGAGAATAGAAAGAGGAGGTATGGAATTCACAAAGAGATGTCAGGGTGGAAGGTGAGTAGGGAGAGGACGAAGAGTTTTAAAATAGAAGAGAGAAAAAGGGAGGTGGAGGAATGCAGGGGTGGAACGGCCGAGCTCGACGTATGGAGGGGGGCAGAGATCGACTGGAGCCAGACTGGGTGTATGCATCTGAGAGAGTCACTGTGGTAAGTGTGTTTTTCTTCTCGAACCCCTGCCACCTCCCTAAATGAACAGCCTGTGATCTACTGTGACTGTTTAAGCGCATACGAGAGGACTTTTCCATTAGGATGCATTGTCATGCTATTAGAATGTGATACAAATTTGATTTGACAAATGTGACAAGTGTTGCTTATGCGGTCAGACATCACTGCAGGACATTTTAATGTGATGTTATCCACCAAGGCATGCATGAGTGTTGTGTTTGCATGTGTTTGTATGCTAGTTAAAGCTTTGGGACATGTTCTGGGCTTGTATTTTTAACATTTTTCTTTTTTTAAGAAACATAAATGTCTTTTATTTCAACTAACTTTGACTAATTGTTGGATGTAAACATTAGTATGGAGAGTGTAATGGTCTCCTAATGGTGTGTGTGTGTGTGTATCTGTATGTATGTTTGTGTATGCATGTGAAGTGATATCAATCCCTATGGAAGTGAATGGCAATTGGATTAAACTATTGATTTAGTCTGGAGCAGGTAGACATACACCCAGTCGGCCAGACAAGGGGGAAGGGCCATCCACATTACTGCAGACATCTTCATCAATAATCCTCTCGCACCCAAAACTAAACCAACAGCAGTGACCAGCACAATAATGTGAATTGTTTGGATGTGCTATAAATGATGTTTTATTAACAAAGTTCAGGAGGAGCACGTTCAAGTGATACCCAATCAGCACGAAGGGAGGCCTATATATACTCACCTATGTTCCTCTGCAGTTTTCTGCATCCCTTCACCACCCCGGCCAAAACTCTGTTTGCTCTATCCGAATATTTGTTAGTGCGAACTCGTGAAATGACCAGCTTTTGCACAGATACACACATACATACTTCCATGTGAATTTCACATGCATGTTACAATGTGCTACTTCTGAACTTTTTCCTTTTTGTGTTATGACTTATTTGTATTGCTTTTATGTCTAATGTCAACTTGATGTCATTTTTACGACTTTTAAATTGTTGGAAAAGTCTGGATTCTTGTAAAAATGGTTTAATACGTTTGTCAGATATGCTAAAGTTTCCTAATTATGTGTTTTACACCCTAAAATCCAGTTTTAAAAGTTTCCCAGCGAACTTGTCCAGTCCACAAAACTGGCTGTGATCCCTATGAACTCATTCACCAGAGGGTCATGAGTTCAAGTCCCAAGTGGGGGAGGGGGGCTGCCATGGTAGCCTTATATTTTCTTCCAGACCCTTCCCCCTTTCTTTTCCGCATCTCACACAGCCGTCATTTCGACGGCTGGACAAACACGAACATCAGGCCTGTTACTTTTGCCTGCTCATATAGTCAAAAGATCGCCTCATAGGCCAACAGCCGGTCCCATTTTGTGCAGATATGGGCCTTGAGAGTAGTTTCTTTGCAGTTTTTAATGGCAAATAGTTGTTATGTAATGCATCACTCTTTCCAAAAGTCCCGTAAAACTTGCTTTCATGTTTGACATTGCATACACACCGCACTGTCTGTTTGCATGTGCATACGTGAGCGCGTTCCAAACGCATCGAGGCAACAAACGGACGAGGCACATTTCAGACAGCCCCTCTTTCATAGGAAATGAGACCCTTTGACCTTTGCCATTCAGTCTGTCTGGAAATGCCGAGCCTGGAATCGATCAACACCCCCTTGCCCAGACATGCACTCACCACCTCCACTCTTCTGCCCGCTCTCTCAATTCCTCCTTCCCCCTTCCATTTTTCTTTCTCTCTCCAATCAGCAACCCCCTGTTCCCGCTCACTCTCAGCTCCTGGTCCCTTCCCCCCACGATCAGATAATAGACCCCACAGAGCTCATGCTATACTTCATGCAGAGCTCTGCGCCCACTTCCCTGTGCATTTGACCAGATCTCCACAGCCCCCAGTGCTCACACAAAACTTCCCGTCAGCGACTGTGAGTGCACAGTCCCATATGGCTCAAAAATGTATTTGTCCTGGCCAAAATATATGCTAAATACATGCTTAAGGACATGTATTTTTCAAATCAACAAAATTTACTGCAATATGTAATGCAATATTGCAATGTATTTTAGGGGGCAAGAAAACACATTCAGTCTTAAAATGCTGCACTTTGGGTAAATGCAAAATGTTTGTGCATATATATATATATAATATATATCTGCAACTTTTTTACTGTGGGGATGGGTTGTAGATTTGTTAATGTGGTTAACATAATTGAAACTAGTTGGGGTGGGAATGTAAGAAATATCATGTGAGGTACATAACTGTGTTCATGTCAATTTTTTAATGTGCATGTCTAAAATCACACAATTCCAGCAGAATCCAAAGTATGTGTCAGTCCCAGTCGAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_05046565_05048523.mRNA False 1699 mRNA 0.46 2 5045967 5049408
TU312063 True 2764 TUCP 0.43 1 5046227 5048990

Neighbor

gene id symbol gene type direction distance location
CI01000069_05033299_05034403 NA coding upstream 11362 5033299 ~ 5034605 (+)
CI01000069_05002707_05021316 CARM1.L, CARM1P1.L, CARM1 coding upstream 22885 5002707 ~ 5023082 (+)
CI01000069_04990240_04994522 ALDH3B1 coding upstream 51098 4988735 ~ 4994869 (+)
CI01000069_04981836_04982608 NA coding upstream 62871 4980959 ~ 4983096 (+)
CI01000069_04917103_04918567 ALKBH7 coding upstream 127066 4917103 ~ 4918901 (+)
CI01000069_05064327_05071992 SLC25A23B coding downstream 14708 5064116 ~ 5072032 (+)
CI01000069_05077178_05084933 ZNF207B, ZNF207 coding downstream 27770 5077178 ~ 5085462 (+)
CI01000069_05086587_05092363 NA coding downstream 36876 5086034 ~ 5092572 (+)
CI01000069_05097987_05099733 NA coding downstream 48579 5097987 ~ 5099841 (+)
CI01000069_05150719_05164593 NA coding downstream 98651 5148059 ~ 5165388 (+)
G275048 NA non-coding upstream 6052 5039622 ~ 5039915 (+)
G275047 NA non-coding upstream 6500 5039049 ~ 5039467 (+)
G275017 NA non-coding upstream 57977 4987765 ~ 4987990 (+)
G275008 NA non-coding upstream 59700 4969222 ~ 4986267 (+)
G275022 NA non-coding downstream 44704 5094112 ~ 5096981 (+)
G275065 NA non-coding downstream 68334 5117742 ~ 5117956 (+)
G275085 NA non-coding downstream 122458 5171866 ~ 5173310 (+)
G274953 NA other upstream 119280 4924467 ~ 4926687 (+)
CI01000069_04556116_04558002 PYY, PYYA other upstream 487487 4555269 ~ 4558480 (+)
G274619 NA other upstream 912589 4129128 ~ 4133378 (+)
G274603 NA other upstream 1242466 3800023 ~ 3803501 (+)

Expression


Co-expression Network