G273482


Basic Information

Item Value
gene id G273482
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 99720 ~ 120649 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU310329
TTATTCACACCATTATTTATTGTAAATGTTTGAAAACCCACAAGTGCAACAATCCATGGTTTTGAACAGAGAAAATTGCATTGAAAGTTACATATGCATAAGAGCTAAAACATCAGACAAACAAAATGACTGTCTCTACATGATTGTTAGTTGGGAAGAATTTCATACCGTCCTTGTAATGTAGTAAAAAGGTCTTATTTAATCTGGTTTGGAACATAGTTATGCCATATTAAGGAAAATAAAACGGGTTTTTCCTGTGCATAATGTTTATAAAGGCAATGGGTAGCATGGAAAAGAAAAAAAAAAATATAACTTATCAAAATAAAAACCAAATATTGCATAAAAGAATCTCTAGTTTTATGCATGCTTCAAGCAATGCCCAAAACAACAGAGATAAGGCTAATAAATTAATAAACACAGCTGTGATATGCTAAGAGCAAAATGACCTTTACATGTGAGAAATGGCTTTGTTTCAGTGCTTCTCCCTCAAGCACGAGTGTATCTCTATGTGATACAGTTCAAATATGGTTTGTTCACTAGCTAGAGACAATCTTATAATGTCCAGTAAGATATATACATATATAAACATAGCTTTCAGTCACCTATCAGTACATCCTGACGCTCTGCTGTCTCTTTTCAATATAGGTCGCACCAATCATTTTGACCTGAGGAAAACATCAGTGTGTATCAATAAAAACCTCATGTCGGATCAGCAGAGGACGCGATTACAGCTCCTGCCATACTGTAGATGTCCTGTTCCAGCACAGGGCTGATGAGGTGAGTTCCTATAACACTTGGTTTGGGAAAGGCAGTTTTAACGATACAACTATTTCTAGGAATCTTCTGTCCTAAATGAAATAAGGATGGAATGAGGGATCATCGGTTTTGTAGTTTTTTTTTTTTTAGAGGGCCTGGGTTGCTGTAATATGCCGGATGCACTGATCACCGCTGCTTGAGGAGAGCTTTGTACATGGCAAAGCCAAGAACTGCAAACACGGTGGCACCGACACTCGCCCTCAGCCAAAAAGTAGAGTTTTTCAGGTCAGCTTGGGTCATGTGTGGATACATAGCCATGGTGGTGAGTTTGGTGTAGATGTCTTTGCTGGGTGCTTCGGCTGTGTTGCAGGTGAACAGCTGTGGCGGGTGAAGCTTGTGTTTCCGGCAGAAATCCAACGGAGACAGGCTGTAGTATTGACGTGCTTCATGCAGGTCTGACTTGGCAGAAATAATCACACAGGGTGTCTTGCTGTCCATATAGTGTTTCTTGTAGACTTTAGCGCAGTACTCAAAGGAGCATGGGTTGCTGATGTCATACACCAGGCAAACAACATCACAAGCCAGATCAGCCTCAGATAGGAACTCAAAGTCTGGCAGCACCTCGTGCAGGAGCAGATATTTCTCTTGTCCATAAACATAAGTGGTGCTAATGGCATAGTAAGACTTGTGGTCTTCCCTTATCTTCTTCTGACGCACAAGGTTCCTGCCCAGGAAACCCTGCAGAAAGCCACTTTTACCGCTGCCCCGAGCTCCTAGGACATTGCAGCGGAAAACACTGCGCTGGGTCTGTTTCTTCTGCAGATCAATGCGCTTATTTCTGGTGACTGTTATAGCGGCTGCCTGAGACTCCTGTTCTTGGATAATAGAGTAACCAAGATAACCGAGGTACTCCAAACATCGCTGCACATCTAGGTATGTTGTTAGCGTCCACTGGGAAAGGTAGCCTTGGTAAGTGATCCAGCCCTGCTCATTGGTGCAGACCGTGTTGTTGACATCAGGACCCCAGGGCATGTAGGGAAAGACCTTGAACAAATCCTTCAGCTCATCTGGAGACAGGGCACAGTCTCGATCCTTGTCGTGCTTGTCAAAGACGCTCTGGAGGAAGAGGTAGGCGTTGTGGTTCAGCTCTGTGGTACAGTCTGGGGGTATTTTTAACAGTGGAAACAGGTATTCTTGTGTCAGCTCCAGATCATCATCATAACCAAACCTCCTGAGCACAGTCCACGTGGTCTCGTGCCTTCCCCTCTGAATGAAGAGTGTATGAAGGAACAGGAAACCCTTCAGTGTGAGGCCGTTGTCTTTCACCCCATCTGACATATTTTTCCGCACAACATTCTTCACGTCCTCCAGGGCTTGGGGTGCCAGGGGTATGTTAAAACAAGTTCTCTGGAAGAAATTAAGCTCATTATCGTTCAGAATGCCATCATTGTCAAGGTCTGATATTTTGAAAATGCGAGTAAGTGCTTTGATGCAAGATGGCTTCATCTCTTTCTCTTCTGGAGAGTACAAAGGTCCTGTTGGGTGCAGAACAGCCTTCTGGGCGTAGTAGAACAACTCTGAGATATTCTTCAGGTTTTTGGCTGAACACTCCACGCAGGTCTCAATCTCAGAGTACTGGTTCATGATGGGCAGGATGGTCTCCATGCTGCTGTGCTCCACTAGGTCAGATTTATTCCCCACCAGGATCAATGGTACTCTGCTGTCCTTATCCGTTCTTTCATTGATGAGGGGAATCCAATGACTTGTCACCTTTTCGATCGATTTCTTGTTGTTTACTGAATATACGATGCATATAACATTAGCCTTTGATATCTCTTGGTAAAGCTGCTCATCTGACTGTTCTGCTTCTGAGTAGTCCACTATATGAGTGGGCACTCTCTCAGGTGTGACATCAGCAGGAATAGTGATCTCTTCAGCTCTGAGAGGAACCTCATCAGGGAATTCCTCACTGACGAGTGACATGATCAGGGAGGTCTTCCCCACTTTGGGTTCTCCGACTAGTAATATCCTCACGTCCTTTCTCATCGTTGCAACTTTAATGTGATCAAAATAAAAAACGAACAAGCCCTTTGTCGTAGATCATTGATCCTGCTGCTATATGTAATAGCGCAGGCCTCTGTAGGGCAAAACGGACGGATCAACTTTTGTCTCAGTCTGTATGAAACTTATGTTCGCACCAGTTTAACAAACAGAAGAGATTCATGCCATTAAGATAAAGCGTTTCCGCGTATATGAAGGCACTGCTTGCTTTCTTCAGATTCACTTCATGACATTTCTGGGTTCACATTTCAAGCTCACGCCAGAGGCGGCTGACCTCCAATAACCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU310329 True 3103 lncRNA 0.44 19 99720 120649

Neighbor

gene id symbol gene type direction distance location
CI01000069_00070778_00073734 BRAFLDRAFT_264576, BRAFLDRAFT_218264, BRAFLDRAFT_218328, PPP4CB, PPP4C, PPP4CA coding downstream 25317 70496 ~ 74403 (-)
CI01000069_00059923_00065619 MAPK3, MAPK1, MK03 coding downstream 33704 59853 ~ 66016 (-)
CI01000069_00044853_00051264 YPEL1, YPEL3, YPEL2, YPELD, YPELA, YPELC coding downstream 46824 43906 ~ 52896 (-)
CI01000069_00041648_00043198 EHD3 coding downstream 56279 41648 ~ 43441 (-)
CI01000069_00029366_00037113 NA coding downstream 62154 29357 ~ 37566 (-)
CI01000069_00142555_00146746 NA coding upstream 21674 142323 ~ 147185 (-)
CI01000069_00156359_00158953 NA coding upstream 35083 155658 ~ 160090 (-)
CI01000069_00197131_00227540 XYLT1 coding upstream 76440 197089 ~ 227924 (-)
CI01000069_00254198_00256321 NA coding upstream 133361 254010 ~ 257542 (-)
CI01000069_00258308_00258828 NA coding upstream 137255 257904 ~ 258828 (-)
G273488 NA non-coding downstream 32721 66298 ~ 66999 (-)
G273493 NA non-coding downstream 51217 48300 ~ 48503 (-)
G273483 NA non-coding upstream 30887 151536 ~ 154085 (-)
G273528 NA non-coding upstream 147506 268155 ~ 268357 (-)
G273530 NA non-coding upstream 151076 271725 ~ 271933 (-)
G273531 NA non-coding upstream 151521 272170 ~ 272535 (-)
CI01000069_00952894_00955774 NA other upstream 692586 952361 ~ 955790 (-)
G275178 NA other upstream 806274 926923 ~ 945804 (-)
CI01000069_01645966_01647142 NA other upstream 1525119 1644522 ~ 1647326 (-)
CI01000069_02589498_02621318 SYT3 other upstream 2490526 2589469 ~ 2621641 (-)
CI01000069_02997434_03008924 NA other upstream 2868377 2997275 ~ 3008924 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013393 rhot1a,LOC108430568,LOC107729179 coding CM030125.1 CM030125.1 30126697 ~ 30153358 (-)