G275235


Basic Information

Item Value
gene id G275235
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 970618 ~ 971686 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU312281
CTCACATTAAATATAGTTCAGGAAAGTCATGACTAATACAGCTACACTAGAAAATTCAGATGTTTTTTTTCTTTTTTCTTCTGATATTTTGGAAAGCTTTAAGAGTCAATTACACTTAAACTGATTTTCCTTTCAAATCTCAGTGCTGTGAAAAACTTAAAACTGGCAGCTAAAAAAAAACCTGTCAGAGTAACAGAGAGAAATATACAGGACTTACATCAGTGTCAAATCTGCCAAAGTTAATGAGACCAGGGCTGGAGAGGTCTCCAGGCTTCTCATGGTAAATACTCAGGAAAAAGTTCAGTGTGAAGCTGGAGACCATCGAAGCAAAGAAAATTCTCCAAGTCAACATTTGGTTCCAGAAAGATGCGCCTTCCTCTAAACTGAACAGAACCCCACCTGTGCCCAAAAACACAATGATCCTGAACAATCTGATGCTAGATTCATTCCAGGGCAGTTTAAGAGCATTTATTCAGAGAAACAAATGATGTATTTTCACTTACAGCTACAACTCTTGAGTATATCACGTATTTTAATATGCTTTAAAGTGCCCCTATTATGGATTTTTGAAAATTACCTTTCATGCAGTGTGTAATGTACCTGTATGTGAATGTAAACAGACTGCAAAGTTGTAAAACTGAAAGTGCCTCATAAAGTTATTGTCTCTCAAAAGAAAAAGTCGACTCTGAACCGTTTAAACCAGTCATTTGTAATTCGAATCCCACTTCCGCGAAGTTCACACGTCACACGTTAATACATTTGCATAATGACCACCTACAATCTGCGTGGACATCCCACGAAAAATTTAACCCCTCTCAAACGCTGTAGCTCGTTCGTGTGGATAACATGTCGACAAGATGCTGTGCGCTGCGCTGTGAAAGTAAATTTGGCTTATTTTCACTTCCAAAGTATGAGGGTGTGAAGAATCAGTGGTTAAAGATGGGACAGTACCTGCTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU312281 True 959 lncRNA 0.38 2 970618 971686

Neighbor

gene id symbol gene type direction distance location
CI01000069_00952894_00955774 NA coding downstream 14844 952361 ~ 955790 (-)
CI01000069_00919963_00924163 CUNH16ORF72, C16ORF72, C2H16ORF72, C16ORF72.S, C6H16ORF72, CLG13H16ORF72 coding downstream 45008 919921 ~ 925610 (-)
CI01000069_00583939_00586883 NA coding downstream 383735 583794 ~ 586883 (-)
CI01000069_00564614_00567490 NA coding downstream 403042 563530 ~ 567576 (-)
CI01000069_00516206_00538847 NA coding downstream 431024 516206 ~ 539594 (-)
CI01000069_00983726_00984227 PDE6G coding upstream 11467 983153 ~ 984314 (-)
CI01000069_01023405_01025613 NA coding upstream 51656 1023342 ~ 1026058 (-)
CI01000069_01052717_01076129 ABAT coding upstream 80522 1052208 ~ 1076129 (-)
CI01000069_01085974_01097576 METTL22 coding upstream 113979 1085650 ~ 1097576 (-)
CI01000069_01141607_01144384 NA coding upstream 169784 1141470 ~ 1144821 (-)
G275234 NA non-coding downstream 3740 965384 ~ 966878 (-)
G275173 NA non-coding downstream 18374 916484 ~ 952244 (-)
G273728 NA non-coding downstream 194960 775331 ~ 775658 (-)
G273727 NA non-coding downstream 196152 774190 ~ 774466 (-)
G273726 NA non-coding downstream 196665 773631 ~ 773953 (-)
G275175 NA non-coding upstream 28237 999923 ~ 1002774 (-)
G275169 NA non-coding upstream 43152 1014838 ~ 1019446 (-)
G275198 NA non-coding upstream 56287 1027973 ~ 1031978 (-)
G275179 NA non-coding upstream 148676 1120362 ~ 1124297 (-)
G275178 NA other downstream 24814 926923 ~ 945804 (-)
CI01000069_00044853_00051264 YPEL1, YPEL3, YPEL2, YPELD, YPELA, YPELC other downstream 923404 43906 ~ 52896 (-)
CI01000069_01645966_01647142 NA other upstream 674082 1644522 ~ 1647326 (-)
CI01000069_02589498_02621318 SYT3 other upstream 1639489 2589469 ~ 2621641 (-)
CI01000069_02997434_03008924 NA other upstream 2017340 2997275 ~ 3008924 (-)
G275699 NA other upstream 2020818 2992504 ~ 3078168 (-)
CI01000069_03415853_03417644 LIMD2 other upstream 2441287 3412973 ~ 3417644 (-)

Expression


Co-expression Network