G274148


Basic Information

Item Value
gene id G274148
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2272060 ~ 2272789 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU311046
TCGTAAGTGGGCAGGGCACAGTATCCAGGTTCTGTCCCGCGTAAAAGACGAGGAGAATGTGTTCGGAAAGGCCTCGGGGAGTGAGAGCACACAGAGCGAGGGGAGGGCGAACGGATGGAGTGAGGTGATGGAGATCGGACGGAACGGGGCGAGTGCGGGATGGAGTGCGATTGAGATTGTGAAGGGGTCAGAGACGGAGCGTGATGATTGAGCTTGGGGGGGCGCGGCGAGCGAGGGGGCAGTTCGGGTGGTTTGAGAGGATCTATAAGGTCTATTTCAGTGAGCAGAGGCGGAGGGGGGATGAACTCCTCGTCTGATAGAGGGATGTCTCCGTCGATCACAGCAAGCTCTGCCCGTGATAGGTGGTCCACAATGCCTGCCCCGAAAGAGTCGCCCACCACGTTAATGGAGGTGCGCATTCTGTCTCTAAAGATACACAAAAGACAGCTCTAAAAGCTGATACAGGACAGCTCAGGATAGCTGTTTATGTTCATGAGGACAGCTGATAATTAGTCAGGACTCCACACACGAAATCAGGGCCGTTGCCAGGGGGATGTAAGCGACGGCCCTGCTGATGTCTTGAGTTGGAAGGCCCACAGCGGTCAAGATTAGCAACATGGTGACCAGACCTGCACTGGGAATACTGGCCGCTCCCACACTGGCCAAAGTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU311046 True 671 lncRNA 0.56 2 2272060 2272789

Neighbor

gene id symbol gene type direction distance location
CI01000069_02256234_02263001 NA coding upstream 8939 2256169 ~ 2263121 (+)
CI01000069_02228111_02232088 IFI35 coding upstream 39964 2228111 ~ 2232096 (+)
CI01000069_02065642_02154533 CACNG2B, CACNG2, CACNG2A coding upstream 117527 2065642 ~ 2154533 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D coding upstream 231633 2031954 ~ 2040427 (+)
CI01000069_02013637_02015088 SSTR3 coding upstream 255314 2013637 ~ 2016746 (+)
CI01000069_02311794_02313206 NA coding downstream 39005 2311794 ~ 2315010 (+)
CI01000069_02393010_02396796 AKT1S1 coding downstream 120221 2393010 ~ 2397732 (+)
CI01000069_02454588_02465668 MYBPC2, MYBPC2A coding downstream 181799 2454588 ~ 2465681 (+)
CI01000069_02466489_02467309 NA coding downstream 192991 2465780 ~ 2467397 (+)
CI01000069_02540591_02547912 NA coding downstream 267721 2540510 ~ 2548022 (+)
G274118 NA non-coding upstream 251975 2019878 ~ 2020085 (+)
G274103 NA non-coding upstream 278870 1992137 ~ 1993190 (+)
G274088 NA non-coding upstream 349564 1922135 ~ 1922496 (+)
G273765 NA non-coding upstream 360616 1909950 ~ 1911444 (+)
G274152 NA non-coding downstream 3055 2275844 ~ 2276087 (+)
G274176 NA non-coding downstream 20168 2292957 ~ 2293167 (+)
G274192 NA non-coding downstream 86142 2358931 ~ 2359146 (+)
G274193 NA non-coding downstream 87522 2360311 ~ 2360544 (+)
G274165 NA non-coding downstream 88582 2361371 ~ 2362637 (+)
G273359 NA other upstream 1792979 477727 ~ 479081 (+)
G274270 NA other downstream 399835 2672624 ~ 2681158 (+)
CI01000069_02894136_02894807 COX6A2 other downstream 620057 2893418 ~ 2894947 (+)
G274603 NA other downstream 1527234 3800023 ~ 3803501 (+)
G274619 NA other downstream 1856339 4129128 ~ 4133378 (+)

Expression


Co-expression Network