XLOC_010508



Basic Information


Item Value
gene id XLOC_010508
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12563230 ~ 12566004 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00021787
CTGCCACCGACTTGAGACGATGACATGGCtcggatgatgatgatgatgatgggggTTTGGGGCTGGTGCCCGTTGGCTGGACGAAATTAAAAATCCGCGGTGATGTAAACAGCTCTCACGGGATCGCATTCTTACCGTAAAAACGGCGGAATGAAACAGTTGACCGGAAGGGATGGAGATCTGGCACGTTGTCAAGAGACAACGCGGAAAAGAAAACACGCTTTTACAATAAGTGTGGATTAAAGACTTGATTTGACGTCAGTGCGCGTCTTGGGAATTTTTTTTCATATCCTCAAAAGCATGTACAACTAAACAAATGTGTAGGACTTGACGCCACTTCCATCCATGACTaaTAATACAGCCAGAGCATATTCACATGGTGACCTTTCCAGAGATAGATAAACATGGTTAAACATCCACCGC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00021787 True 423 lncRNA 0.45 2 12563230 12566004
Loading

Neighbor


gene id symbol gene type direction distance location
XLOC_010507 CU694256.1 coding downstream 31203 12524732 ~ 12532027 (-)
XLOC_010506 cox6b2 coding downstream 50637 12504929 ~ 12512593 (-)
XLOC_010505 slc2a3b coding downstream 66598 12474861 ~ 12496632 (-)
XLOC_010504 ephb6 coding downstream 93196 12335274 ~ 12470034 (-)
XLOC_010503 trpv6 coding downstream 243408 12294284 ~ 12319822 (-)
XLOC_010509 mfap5 coding upstream 103761 12669765 ~ 12689080 (-)
XLOC_010510 sbk3 coding upstream 144900 12710904 ~ 12723738 (-)
XLOC_010511 foxj2 coding upstream 192490 12758494 ~ 12787029 (-)
XLOC_010512 isoc2 coding upstream 227907 12793911 ~ 12809886 (-)
XLOC_010513 cacng8b coding upstream 316377 12882381 ~ 12953739 (-)
XLOC_010626 CR392024.2 misc upstream 8329108 20895112 ~ 20895175 (-)
XLOC_010500 CR388102.5 non-coding downstream 309759 12253415 ~ 12253471 (-)
XLOC_010499 CR388102.4 non-coding downstream 312907 12250268 ~ 12250323 (-)
XLOC_010498 CR388102.2 non-coding downstream 315310 12247862 ~ 12247920 (-)
XLOC_010497 CR388102.3 non-coding downstream 323770 12239407 ~ 12239460 (-)
XLOC_010517 NA non-coding upstream 874733 13440737 ~ 13480372 (-)
XLOC_010519 BX323458.2 non-coding upstream 956295 13522299 ~ 13542460 (-)
XLOC_010520 NA non-coding upstream 979289 13545293 ~ 13551327 (-)
XLOC_010521 NA non-coding upstream 990917 13556921 ~ 13564275 (-)
XLOC_010526 CR848741.1 non-coding upstream 1102162 13668166 ~ 13671219 (-)

Expression


Expression of XLOC_010508 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Co-expression Network